(Q37281223)

English

The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions

scientific article published on 08 January 2009

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scholarly article

1 reference

Europe PubMed Central

19 August 2017

The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions (English)

1 reference

Europe PubMed Central

19 August 2017

10

object named as

Suse Broyde

1 reference

Europe PubMed Central

19 August 2017

author name string

Konstantin Kropachev

1

1 reference

Europe PubMed Central

19 August 2017

Marina Kolbanovskii

2

1 reference

Europe PubMed Central

19 August 2017

Yuqin Cai

3

1 reference

Europe PubMed Central

19 August 2017

Fabian Rodríguez

4

1 reference

Europe PubMed Central

19 August 2017

Alexander Kolbanovskii

5

1 reference

Europe PubMed Central

19 August 2017

Yang Liu

6

1 reference

Europe PubMed Central

19 August 2017

Lu Zhang

7

1 reference

Europe PubMed Central

19 August 2017

Shantu Amin

8

1 reference

Europe PubMed Central

19 August 2017

Dinshaw Patel

9

1 reference

Europe PubMed Central

19 August 2017

Nicholas E Geacintov

11

1 reference

Europe PubMed Central

19 August 2017

language of work or name

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publication date

8 January 2009

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Europe PubMed Central

19 August 2017

Journal of Molecular Biology

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Europe PubMed Central

19 August 2017

386

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Europe PubMed Central

19 August 2017

1193-1203

1 reference

Europe PubMed Central

19 August 2017

5

1 reference

Europe PubMed Central

19 August 2017

Differential nucleotide excision repair susceptibility of bulky DNA adducts in different sequence contexts: hierarchies of recognition signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Versatile protection from mutagenic DNA lesions conferred by bipartite recognition in nucleotide excision repair

1 reference

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6 September 2017

A molecular basis for damage recognition in eukaryotic nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Recognition of DNA damage by the Rad4 nucleotide excision repair protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Cyclobutane pyrimidine dimers are predominant DNA lesions in whole human skin exposed to UVA radiation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Molecular mechanisms of mammalian global genome nucleotide excision repair.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Nucleotide excision repair

1 reference

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6 September 2017

Nature and nurture - lessons from chemical carcinogenesis

1 reference

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6 September 2017

A model for initial DNA lesion recognition by NER and MMR based on local conformational flexibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

The comings and goings of nucleotide excision repair factors on damaged DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Critical DNA damage recognition functions of XPC-hHR23B and XPA-RPA in nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

The carboxy-terminal domain of the XPC protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Sequential assembly of the nucleotide excision repair factors in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Centrosome protein centrin 2/caltractin 1 is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

A multistep damage recognition mechanism for global genomic nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Stable binding of human XPC complex to irradiated DNA confers strong discrimination for damaged sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

The xeroderma pigmentosum group C protein complex XPC-HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Characterization of DNA recognition by the human UV-damaged DNA-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

DNA damage recognition during nucleotide excision repair in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Mutagenic potential of stereoisomeric bay region (+)- and (-)-cis-anti-benzo[a]pyrene diol epoxide-N2-2'-deoxyguanosine adducts in Escherichia coli and simian kidney cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Assembly, subunit composition, and footprint of human DNA repair excision nuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Two human homologs of Rad23 are functionally interchangeable in complex formation and stimulation of XPC repair activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Mechanism of open complex and dual incision formation by human nucleotide excision repair factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Base sequence-dependent bends in site-specific benzo[a]pyrene diol epoxide-modified oligonucleotide duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

XPC and human homologs of RAD23: intracellular localization and relationship to other nucleotide excision repair complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Repair by human cell extracts of single (6-4) and cyclobutane thymine-thymine photoproducts in DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Site-specific rates of excision repair of benzo[a]pyrene diol epoxide adducts in the hypoxanthine phosphoribosyltransferase gene of human fibroblasts: correlation with mutation spectra

1 reference

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6 September 2017

Mammalian DNA nucleotide excision repair reconstituted with purified protein components.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Stereochemistry-dependent bending in oligonucleotide duplexes induced by site-specific covalent benzo[a]pyrene diol epoxide-guanine lesions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Interaction of the UvrABC nuclease system with a DNA duplex containing a single stereoisomer of dG-(+)- or dG-(-)-anti-BPDE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Induction of microsomal enzymes by foreign chemicals and carcinogenesis by polycyclic aromatic hydrocarbons: G. H. A. Clowes Memorial Lecture.

1 reference

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6 September 2017

Frequency and spectrum of mutations produced by a single cis-syn thymine-thymine cyclobutane dimer in a single-stranded vector

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

6 September 2017

DNA bending: the prevalence of kinkiness and the virtues of normality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

14 September 2017

Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism

1 reference

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28 September 2017

NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity

1 reference

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28 September 2017

Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[a]pyrenyl ring into the helix and displacement of the modified deoxyguanosine.

1 reference

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26 June 2018

The major, N2-Gua adduct of the (+)-anti-benzo[a]pyrene diol epoxide is capable of inducing G-->A and G-->C, in addition to G-->T, mutations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

26 June 2018

Sequence dependence of the curvature of DNA: a test of the phasing hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

26 June 2018

Differential repair of UVB-induced cyclobutane pyrimidine dimers in cultured human skin cells and whole human skin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

3 September 2018

Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

3 September 2018

Sequence context- and temperature-dependent nucleotide excision repair of a benzo[a]pyrene diol epoxide-guanine DNA adduct catalyzed by thermophilic UvrABC proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

3 September 2018

Ultra-violet light induced changes in DNA dynamics may enhance TT-dimer recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

3 September 2018

Mutagenesis studies with four stereoisomeric N2-dG benzo[a]pyrene adducts in the identical 5'-CGC sequence used in NMR studies: G->T mutations dominate in each case.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717896

3 September 2018

Diversity of the damage recognition step in the global genomic nucleotide excision repair in vitro

1 reference

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3 September 2018

Bending and circularization of site-specific and stereoisomeric carcinogen-DNA adducts.

1 reference

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3 September 2018

Mutational specificity of the (+)-anti-diol epoxide of benzo[a]pyrene in a supF gene of an Escherichia coli plasmid: DNA sequence context influences hotspots, mutagenic specificity and the extent of SOS enhancement of mutagenesis.

1 reference

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3 September 2018

Flanking base effects on the structural conformation of the (+)-trans-anti-benzo[a]pyrene diolepoxide adduct to N2-dG in sequence-defined oligonucleotides.

1 reference

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3 September 2018

Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spots

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Benzo(a)pyrene diol epoxides as intermediates in nucleic acid binding in vitro and in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of Nenzo[ a ]pyrene 7,8-Diol-9,10-Epoxides to DNA, RNA, and Protein of Mouse Skin Occurs with High Stereoselectivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

B-DNA twisting correlates with base-pair morphology.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence dependence and characteristics of bends induced by site-specific polynuclear aromatic carcinogen-deoxyguanosine lesions in oligonucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA quality control by conformational readout on the undamaged strand of the double helix

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Achieving broad substrate specificity in damage recognition by binding accessible nondamaged DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA repair triggered by sensors of helical dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/19162041

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2008.12.082

1 reference

Europe PubMed Central

19 August 2017

1 reference

Europe PubMed Central

19 August 2017

1 reference

Europe PubMed Central

19 August 2017

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