(Q37309445)

English

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

scientific article published on 23 July 2009

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scholarly article

1 reference

Europe PubMed Central

19 August 2017

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions (English)

1 reference

Europe PubMed Central

19 August 2017

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15

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Europe PubMed Central

19 August 2017

Jingyi Jessica Li

Jingyi Li

3

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author name string

Stewart MacArthur

1

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Europe PubMed Central

19 August 2017

Xiao-Yong Li

2

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Europe PubMed Central

19 August 2017

James B Brown

4

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Europe PubMed Central

19 August 2017

Hou Cheng Chu

5

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Europe PubMed Central

19 August 2017

Lucy Zeng

6

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Europe PubMed Central

19 August 2017

Brandi P Grondona

7

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Europe PubMed Central

19 August 2017

Aaron Hechmer

8

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Europe PubMed Central

19 August 2017

Lisa Simirenko

9

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Europe PubMed Central

19 August 2017

Soile V E Keränen

10

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Europe PubMed Central

19 August 2017

David W Knowles

11

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Europe PubMed Central

19 August 2017

Mark Stapleton

12

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Peter Bickel

13

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19 August 2017

Mark D Biggin

14

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19 August 2017

publication date

23 July 2009

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19 August 2017

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19 August 2017

10

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19 August 2017

R80

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19 August 2017

7

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Europe PubMed Central

19 August 2017

https://scigraph.springernature.com/pub.10.1186/gb-2009-10-7-r80

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Transcriptional regulatory networks in embryonic stem cells.

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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

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REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.

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Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells

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Global analysis of patterns of gene expression during Drosophila embryogenesis.

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Genome-wide mapping of in vivo protein-DNA interactions

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A core transcriptional network for early mesoderm development in Drosophila melanogaster.

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Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

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Foxp3 occupancy and regulation of key target genes during T-cell stimulation

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Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics

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Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

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Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays.

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Core transcriptional regulatory circuitry in human embryonic stem cells

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Transcriptional control in the segmentation gene network of Drosophila

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

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Transcriptional regulation in Drosophila: the post-genome challenge.

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Accessibility of transcriptionally inactive genes is specifically reduced at homeoprotein-DNA binding sites in Drosophila

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A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos.

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Gene regulatory functions of Drosophila fish-hook, a high mobility group domain Sox protein.

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Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo.

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DNA binding specificity of two homeodomain proteins in vitro and in Drosophila embryos.

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The eve stripe 2 enhancer employs multiple modes of transcriptional synergy.

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The daughterless gene product in Drosophila is a nuclear protein that is broadly expressed throughout the organism during development.

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Gap gene properties of the pair-rule gene runt during Drosophila segmentation.

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Mutations affecting segment number and polarity in Drosophila

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A gradient of bicoid protein in Drosophila embryos.

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Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter.

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Transcription factor access to chromatin.

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Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila

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cis-acting control elements for Krüppel expression in the Drosophila embryo.

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Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos.

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26 June 2018

Krüppel requirement for knirps enhancement reflects overlapping gap gene activities in the Drosophila embryo.

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26 June 2018

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26 June 2018

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26 June 2018

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26 June 2018

Control and function of terminal gap gene activity in the posterior pole region of the Drosophila embryo.

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26 June 2018

The control of cell fate along the dorsal-ventral axis of the Drosophila embryo.

1 reference

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26 June 2018

Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes.

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26 June 2018

dorsal-twist interactions establish snail expression in the presumptive mesoderm of the Drosophila embryo.

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26 June 2018

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26 June 2018

The Drosophila sloppy paired locus encodes two proteins involved in segmentation that show homology to mammalian transcription factors.

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26 June 2018

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

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2 September 2018

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1 reference

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2 September 2018

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2 September 2018

Stepwise formation of a SMAD activity gradient during dorsal-ventral patterning of the Drosophila embryo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

The effects of selection against spurious transcription factor binding sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

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1 reference

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2 September 2018

Eve and ftz regulate a wide array of genes in blastoderm embryos: the selector homeoproteins directly or indirectly regulate most genes in Drosophila.

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2 September 2018

Medea is a Drosophila Smad4 homolog that is differentially required to potentiate DPP responses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Establishing neuroblast-specific gene expression in the Drosophila CNS: huckebein is activated by Wingless and Hedgehog and repressed by Engrailed and Gooseberry.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Drosophila Paired regulates late even-skipped expression through a composite binding site for the paired domain and the homeodomain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

In vivo requirement for the paired domain and homeodomain of the paired segmentation gene product.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Silencers and domains of generalized repression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Interacting functions of snail, twist and huckebein during the early development of germ layers in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Schnurri is required for Drosophila Dpp signaling and encodes a zinc finger protein similar to the mammalian transcription factor PRDII-BF1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

The Drosophila schnurri gene acts in the Dpp/TGF beta signaling pathway and encodes a transcription factor homologous to the human MBP family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Three maternal coordinate systems cooperate in the patterning of the Drosophila head.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

daughterless is essential for neuronal precursor differentiation but not for initiation of neuronal precursor formation in Drosophila embryo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

A Drosophila protein related to the human zinc finger transcription factor PRDII/MBPI/HIV-EP1 is required for dpp signaling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Changing rates of DNA and RNA synthesis in Drosophila embryos.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728534

2 September 2018

Chromatin structure mapping in vivo using methyltransferases

1 reference

https://pubmed.ncbi.nlm.nih.gov/19627575

12 December 2020

based on heuristic

deduced from PubMed ID

The general affinity of lac repressor for E. coli DNA: implications for gene regulation in procaryotes and eucaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19627575

12 December 2020

based on heuristic

deduced from PubMed ID

Expression, function, and regulation of the hairy segmentation protein in the Drosophila embryo

1 reference

https://pubmed.ncbi.nlm.nih.gov/19627575

12 December 2020

based on heuristic

deduced from PubMed ID

The snail gene required for mesoderm formation in Drosophila is expressed dynamically in derivatives of all three germ layers

1 reference

https://pubmed.ncbi.nlm.nih.gov/19627575

12 December 2020

based on heuristic

deduced from PubMed ID

Identifiers

10.1186/GB-2009-10-7-R80

1 reference

Europe PubMed Central

19 August 2017

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

19 August 2017

1 reference

Europe PubMed Central

19 August 2017

ResearchGate publication ID

0 references

Sitelinks

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