(Q37377418)

20 August 2017

An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations (English)

1 reference

20 August 2017

2

Patricia C Babbitt

1 reference

20 August 2017

Holly J Atkinson

1

1 reference

20 August 2017

23 October 2009

1 reference

PLOS Computational Biology

20 August 2017

1 reference

20 August 2017

5

1 reference

20 August 2017

e1000541

1 reference

20 August 2017

10

1 reference

Creative Commons CC0 License

20 August 2017

start time

23 October 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

6 September 2017

1 reference

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A disulfide-bond A oxidoreductase-like protein (DsbA-L) regulates adiponectin multimerization

6 September 2017

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6 September 2017

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Mitochondrial copper(I) transfer from Cox17 to Sco1 is coupled to electron transfer

6 September 2017

1 reference

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The disulfide bond formation (Dsb) system

6 September 2017

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6 September 2017

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The catalytic mechanism of peroxiredoxins.

6 September 2017

1 reference

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Dendroscope: An interactive viewer for large phylogenetic trees

6 September 2017

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Generating disulfides with the Quiescin-sulfhydryl oxidases

6 September 2017

1 reference

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The name's bond......disulfide bond

6 September 2017

1 reference

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Monothiol glutaredoxins: a common domain for multiple functions.

6 September 2017

1 reference

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The generation of new protein functions by the combination of domains

6 September 2017

1 reference

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The origami of thioredoxin-like folds

6 September 2017

1 reference

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ERp27, a new non-catalytic endoplasmic reticulum-located human protein disulfide isomerase family member, interacts with ERp57

6 September 2017

1 reference

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Arsenate reduction: thiol cascade chemistry with convergent evolution

6 September 2017

1 reference

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Protein disulfide isomerase: the structure of oxidative folding

6 September 2017

1 reference

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Optimization of bivalent glutathione S-transferase inhibitors by combinatorial linker design

6 September 2017

1 reference

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

6 September 2017

1 reference

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Saccharomyces cerevisiae cells have three Omega class glutathione S-transferases acting as 1-Cys thiol transferases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database

6 September 2017

1 reference

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The crystal structure of yeast protein disulfide isomerase suggests cooperativity between its active sites

6 September 2017

1 reference

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Characterization of the omega class of glutathione transferases.

6 September 2017

1 reference

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Pfam: clans, web tools and services

6 September 2017

1 reference

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Thiol redox control via thioredoxin and glutaredoxin systems

6 September 2017

1 reference

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6 September 2017

1 reference

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FAST: a novel protein structure alignment algorithm.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Structural classification of thioredoxin-like fold proteins.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Parallel evolutionary pathways for glutathione transferases: structure and mechanism of the mitochondrial class kappa enzyme rGSTK1-1

6 September 2017

1 reference

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Glutaredoxins: glutathione-dependent redox enzymes with functions far beyond a simple thioredoxin backup system

6 September 2017

1 reference

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SCOP database in 2004: refinements integrate structure and sequence family data

6 September 2017

1 reference

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The Pfam protein families database

6 September 2017

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UniProt: the Universal Protein knowledgebase

6 September 2017

1 reference

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Human mitochondrial glutaredoxin reduces S-glutathionylated proteins with high affinity accepting electrons from either glutathione or thioredoxin reductase

6 September 2017

1 reference

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X-ray structure of glutathione S -transferase from the malarial parasite Plasmodium falciparum

6 September 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

6 September 2017

1 reference

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The tetrameric structure of Haemophilus influenza hybrid Prx5 reveals interactions between electron donor and acceptor proteins

6 September 2017

1 reference

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Structure, mechanism and regulation of peroxiredoxins

6 September 2017

1 reference

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6 September 2017

Prostaglandin E synthase

2 references

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6 September 2017

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000541

CxxS: fold-independent redox motif revealed by genome-wide searches for thiol/disulfide oxidoreductase function

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Cytochrome c maturation: a complex pathway for a simple task?

6 September 2017

1 reference

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6 September 2017

1 reference

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Mammalian class Sigma glutathione S-transferases: catalytic properties and tissue-specific expression of human and rat GSH-dependent prostaglandin D2 synthases

6 September 2017

1 reference

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Solution structure of Escherichia coli glutaredoxin-2 shows similarity to mammalian glutathione-S-transferases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Structural basis for the thioredoxin-like activity profile of the glutaredoxin-like NrdH-redoxin from Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Human glutathione transferase A3-3, a highly efficient catalyst of double-bond isomerization in the biosynthetic pathway of steroid hormones

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Solution nuclear magnetic resonance structure of a protein disulfide oxidoreductase from Methanococcus jannaschii

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Identification, characterization, and crystal structure of the Omega class glutathione transferases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

6 September 2017

The Protein Data Bank

1 reference

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6 September 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Structure, catalytic mechanism, and evolution of the glutathione transferases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Thioredoxin--a fold for all reasons

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Thioredoxin and glutaredoxin systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

One thousand families for the molecular biologist

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Mutations in the thiol-disulfide oxidoreductases BdbC and BdbD can suppress cytochrome c deficiency of CcdA-defective Bacillus subtilis cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Power-law-like distributions in biomedical publications and research funding

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Divergence of function in the thioredoxin fold suprafamily: evidence for evolution of peroxiredoxins from a thioredoxin-like ancestor

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Reduction of mutant phage T4 glutaredoxins by Escherichia coli thioredoxin reductase.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Evidence for an essential serine residue in the active site of the Theta class glutathione transferases

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Ionisation of cysteine residues at the termini of model alpha-helical peptides. Relevance to unusual thiol pKa values in proteins of the thioredoxin family.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

A novel glutathione transferase (13-13) isolated from the matrix of rat liver mitochondria having structural similarity to class theta enzymes

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

The purification, characterization, and primary structure of a small redox protein from Methanobacterium thermoautotrophicum, an archaebacterium

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Neospora caninum: functional inhibition of protein disulfide isomerase by the broad-spectrum anti-parasitic drug nitazoxanide and other thiazolides.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

A conserved cis-proline precludes metal binding by the active site thiolates in members of the thioredoxin family of proteins.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

A novel monothiol glutaredoxin (Grx4) from Escherichia coli can serve as a substrate for thioredoxin reductase.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Structural drift: a possible path to protein fold change

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Identity and functions of CxxC-derived motifs

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

Proton sharing between cysteine thiols in Escherichia coli thioredoxin: implications for the mechanism of protein disulfide reduction.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2757866

A thioredoxin from the hyperthermophilic archaeon Methanococcus jannaschii has a glutaredoxin-like fold but thioredoxin-like activities

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19851441

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000541

1 reference

journals/ploscb/AtkinsonB09

20 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

20 August 2017

1 reference

PMCID

2757866