(Q37522879)

20 August 2017

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title

Advantages of next-generation sequencing versus the microarray in epigenetic research. (English)

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20 August 2017

Paul J Hurd

1

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author name string

Christopher J Nelson

series ordinal

2

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20 August 2017

1 May 2009

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Briefings in functional genomics & proteomics

20 August 2017

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20 August 2017

8

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20 August 2017

174-183

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20 August 2017

3

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Next-generation DNA sequencing methods

20 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide location and function of DNA binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Repeatability of published microarray gene expression analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

DNA microarray technologies for measuring protein-DNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

The transcriptional regulatory code of eukaryotic cells--insights from genome-wide analysis of chromatin organization and transcription factor binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Global patterns of histone modifications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

High-resolution profiling of histone methylations in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide mapping of in vivo protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

ChIP-seq accurately predicts tissue-specific activity of enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

The role of chromatin during transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

High-resolution mapping and characterization of open chromatin across the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Dynamic regulation of nucleosome positioning in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Chromatin modifications and their function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Chromatin challenges during DNA replication and repair.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Combinatorial patterns of histone acetylations and methylations in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

EUKARYOTIC CYTOSINE METHYLTRANSFERASES

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

The methylome: approaches for global DNA methylation profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Genome-wide high throughput analysis of DNA methylation in eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Transcriptome sequencing to detect gene fusions in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Sequence-based advances in the definition of cancer-associated gene mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Targeted high-throughput sequencing of tagged nucleic acid samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Parallel tagged sequencing on the 454 platform.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Mapping translocation breakpoints by next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

In-depth characterization of the microRNA transcriptome in a leukemia progression model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

The complete genome of an individual by massively parallel DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELP013

21 January 2018

Identifiers

DOI

10.1093/BFGP/ELP013

1 reference

20 August 2017

1 reference

PubMed ID

19535508