(Q38059081)

27 August 2017

Software applications toward quantitative metabolic flux analysis and modeling. (English)

1 reference

27 August 2017

1

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27 August 2017

Zeeshan Ahmed

4

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author name string

Astrid Fieselmann

series ordinal

2

1 reference

PubMed ID

23142828

27 August 2017

Saman Majeed

series ordinal

3

1 reference

27 August 2017

9 November 2012

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Briefings in Bioinformatics

27 August 2017

1 reference

27 August 2017

15

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27 August 2017

91-107

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27 August 2017

1

1 reference

Carbon metabolism of intracellular bacterial pathogens and possible links to virulence.

27 August 2017

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Isotopologue profiling of Legionella pneumophila: role of serine and glucose as carbon substrates.

21 January 2018

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KEGG for integration and interpretation of large-scale molecular data sets

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Comparing sequences without using alignments: application to HIV/SIV subtyping

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Path finding methods accounting for stoichiometry in metabolic networks.

21 January 2018

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Genome-scale microbial in silico models: the constraints-based approach.

21 January 2018

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Computation of elementary modes: a unifying framework and the new binary approach

21 January 2018

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Comparison of network-based pathway analysis methods

21 January 2018

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A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

21 January 2018

1 reference

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The geometry of the flux cone of a metabolic network

21 January 2018

1 reference

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Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective.

21 January 2018

1 reference

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Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns

21 January 2018

1 reference

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Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks.

21 January 2018

1 reference

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Dynamic flux balance analysis of diauxic growth in Escherichia coli.

21 January 2018

1 reference

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Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation.

21 January 2018

1 reference

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Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies.

21 January 2018

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A parallel algorithm to compute chemical organizations in biological networks.

21 January 2018

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Large-scale computation of elementary flux modes with bit pattern trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum.

21 January 2018

1 reference

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Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era.

21 January 2018

1 reference

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Hands-on metabolism analysis of complex biochemical networks using elementary flux modes.

21 January 2018

1 reference

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Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation.

21 January 2018

1 reference

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KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.

21 January 2018

1 reference

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METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.

21 January 2018

1 reference

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Fast-Find: a novel computational approach to analyzing combinatorial motifs.

21 January 2018

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

21 January 2018

1 reference

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Staphylococcus aureus physiological growth limitations: insights from flux calculations built on proteomics and external metabolite data.

21 January 2018

1 reference

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FiatFlux--a software for metabolic flux analysis from 13C-glucose experiments

21 January 2018

1 reference

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Bidirectional reaction steps in metabolic networks: I. Modeling and simulation of carbon isotope labeling experiments.

21 January 2018

1 reference

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OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

COPASI--a COmplex PAthway SImulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.

21 January 2018

1 reference

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TinkerCell: modular CAD tool for synthetic biology.

21 January 2018

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WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.

21 January 2018

1 reference

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13C isotopologue perturbation studies of Listeria monocytogenes carbon metabolism and its modulation by the virulence regulator PrfA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

21 January 2018

1 reference

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A novel method for prokaryotic promoter prediction based on DNA stability

21 January 2018

1 reference

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High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived 13C constraints.

21 January 2018

1 reference

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An improved algorithm for stoichiometric network analysis: theory and applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

Advances in flux balance analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

FluxMap: a VANTED add-on for the visual exploration of flux distributions in biological networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

Creating views on integrated multidomain data.

21 January 2018

1 reference

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Network visualization and analysis of gene expression data using BioLayout Express(3D).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

Computing the shortest elementary flux modes in genome-scale metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

Predicting selective drug targets in cancer through metabolic networks.

21 January 2018

1 reference

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ON ELEMENTARY FLUX MODES IN BIOCHEMICAL REACTION SYSTEMS AT STEADY STATE

21 January 2018

1 reference

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Probabilistic Consensus Scoring Improves Tandem Mass Spectrometry Peptide Identification

21 January 2018

1 reference

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Exploring metabolic pathways in genome-scale networks via generating flux modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS065

21 January 2018

Identifiers

DOI

10.1093/BIB/BBS065

1 reference

journals/bib/DandekarFMA14

27 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

23142828