(Q38270273)

1 September 2017

Conformational transition states of a beta-hairpin peptide between the ordered and disordered conformations in explicit water (English)

1 reference

1 September 2017

3

Haruki Nakamura

1 reference

1 September 2017

Narutoshi Kamiya

1

1 reference

PMCID

2373694

1 September 2017

Junichi Higo

series ordinal

2

1 reference

1 September 2017

1 October 2002

1 reference

1 September 2017

1 reference

1 September 2017

11

1 reference

1 September 2017

2297-2307

1 reference

1 September 2017

10

1 reference

Raster3D Version 2.0. A program for photorealistic molecular graphics

1 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Energy landscape of a peptide consisting of alpha-helix, 3(10)-helix, beta-turn, beta-hairpin, and other disordered conformations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

What is the role of non-native intermediates of beta-lactoglobulin in protein folding?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Role of the molten globule state in protein folding.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Understanding beta-hairpin formation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Is protein folding hierarchic? II. Folding intermediates and transition states

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

A statistical mechanical model for beta-hairpin kinetics.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Molecular picture of folding of a small alpha/beta protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Folding dynamics and mechanism of beta-hairpin formation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Essential dynamics of proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Characterizing transition states in protein folding: an essential step in the puzzle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Free energy landscapes of peptides by enhanced conformational sampling.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Enhanced conformational diversity search of CDR-H3 in antibodies: role of the first CDR-H3 residue.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Simulations of protein folding and unfolding

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Conformational sampling of CDR-H3 in antibodies by multicanonical molecular dynamics simulation.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

Protein folding funnels: the nature of the transition state ensemble

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373694

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

31 August 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0213102

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0213102

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0213102

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0213102

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0213102

Prediction of peptide conformation by multicanonical algorithm: New approach to the multiple-minima problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0213102

Thermodynamics of a beta-hairpin structure: evidence for cooperative formation of folding nucleus

21 January 2018

1 reference

12 December 2020

Exploring the energy landscape of a beta hairpin in explicit solvent

1 reference

12 December 2020

De novo design and structural analysis of a model beta-hairpin peptide system

1 reference

12 December 2020

Protein dynamics determined by backbone conformation and atom packing

1 reference

12 December 2020

Beta-hairpin folding simulations in atomistic detail using an implicit solvent model

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.0213102

1 reference

1 September 2017

1 reference

1 September 2017

1 reference

PMCID

2373694