(Q38296593)

English

Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25.

scientific article published on December 2007

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scholarly article

1 reference

Europe PubMed Central

1 September 2017

Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. (English)

1 reference

Europe PubMed Central

1 September 2017

1 reference

based on heuristic

inferred from title

Pseudomonas fluorescens

object named as

Pseudomonas fluorescens

1 reference

based on heuristic

inferred from title

Gail M. Preston

4

1 reference

Europe PubMed Central

1 September 2017

Christopher G. Knight

object named as

Christopher G Knight

3

0 references

David J. Studholme

object named as

David J Studholme

2

0 references

author name string

Jacob Jones

1

1 reference

Europe PubMed Central

1 September 2017

publication date

1 December 2007

1 reference

Europe PubMed Central

1 September 2017

Environmental Microbiology

1 reference

Europe PubMed Central

1 September 2017

9

1 reference

Europe PubMed Central

1 September 2017

3046-3064

1 reference

Europe PubMed Central

1 September 2017

12

1 reference

Europe PubMed Central

1 September 2017

RpoN (σ54) is required for plasmid-encoded coronatine biosynthesis in Pseudomonas syringae

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Compilation and analysis of sigma(54)-dependent promoter sequences

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Transcription regulators potentially controlled by HPr kinase/phosphorylase in Gram-negative bacteria.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

DNA bending and the initiation of transcription at sigma54-dependent bacterial promoters

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

In vivo and in vitro effects of (p)ppGpp on the sigma(54) promoter Pu of the TOL plasmid of Pseudomonas putida.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The IIANtr (PtsN) protein of Pseudomonas putida mediates the C source inhibition of the sigma54-dependent Pu promoter of the TOL plasmid

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Evidence of multiple regulatory functions for the PtsN (IIA(Ntr)) protein of Pseudomonas putida

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The sigma54 regulon (sigmulon) of Pseudomonas putida.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Degradation of RNA in bacteria: comparison of mRNA and stable RNA

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Pfam: clans, web tools and services

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Genes encoding a cellulosic polymer contribute toward the ecological success of Pseudomonas fluorescens SBW25 on plant surfaces

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The crystal structure of phosphinothricin in the active site of glutamine synthetase illuminates the mechanism of enzymatic inhibition

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Inhibition of the Aliphatic Amidase from Pseudomonas aeruginosa by Urea and Related Compounds

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The alternative sigma factor RpoN is required for hrp activity in Pseudomonas syringae pv. maculicola and acts at the level of hrpL transcription

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Virulence of the phytopathogen Pseudomonas syringae pv. maculicola is rpoN dependent

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Differential roles of the Pseudomonas aeruginosa PA14 rpoN gene in pathogenicity in plants, nematodes, insects, and mice

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Ribonucleotide reductase and the regulation of DNA replication: an old story and an ancient heritage.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Negative control of quorum sensing by RpoN (sigma54) in Pseudomonas aeruginosa PAO1

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Genetic characterization of Pseudomonas fluorescens SBW25 rsp gene expression in the phytosphere and in vitro

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Growth-rate dependent RNA polyadenylation in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

FleQ, the major flagellar gene regulator in Pseudomonas aeruginosa, binds to enhancer sites located either upstream or atypically downstream of the RpoN binding site

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

A regulatory trade-off as a source of strain variation in the species Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Cell aggregation of Pseudomonas aeruginosa strain PAO1 as an energy-dependent stress response during growth with sodium dodecyl sulfate.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Tomato seed and root exudate sugars: composition, utilization by Pseudomonas biocontrol strains and role in rhizosphere colonization.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Mutations in genes downstream of the rpoN gene (encoding sigma 54) of Klebsiella pneumoniae affect expression from sigma 54-dependent promoters

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The inhibition of ribonucleoside diphosphate reductase by hydroxyurea, guanazole and pyrazoloimidazole (IMPY).

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Electron transfer in N-hydroxyurea complexes with iron(III).

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Ribonucleotide reductases

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

prpR, ntrA, and ihf functions are required for expression of the prpBCDE operon, encoding enzymes that catabolize propionate in Salmonella enterica serovar typhimurium LT2.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

DksA potentiates direct activation of amino acid promoters by ppGpp

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

RpoN (sigma54) controls production of antifungal compounds and biocontrol activity in Pseudomonas fluorescens CHA0.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

AlgR functions in algC expression and virulence in Pseudomonas syringae pv. syringae

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Novel proteins of the phosphotransferase system encoded within the rpoN operon of Escherichia coli. Enzyme IIANtr affects growth on organic nitrogen and the conditional lethality of an erats mutant

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Adaptation of Pseudomonas fluorescens to the plant rhizosphere

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Functional genomics of stress response in Pseudomonas putida KT2440.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Genetic analysis of the AdnA regulon in Pseudomonas fluorescens: nonessential role of flagella in adhesion to sand and biofilm formation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Poly(A)-polymerase I links transcription with mRNA degradation via sigmaS proteolysis.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Evidence for polyadenylated mRNA in Pseudomonas aeruginosa

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Mutations in genes involved in the flagellar export apparatus of the solvent-tolerant Pseudomonas putida DOT-T1E strain impair motility and lead to hypersensitivity to toluene shocks

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The Bioperl toolkit: Perl modules for the life sciences

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

In silico analysis of the sigma54-dependent enhancer-binding proteins in Pirellula species strain 1.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Domain architectures of sigma54-dependent transcriptional activators

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

In vivo and in vitro effects of integration host factor at the DmpR-regulated sigma(54)-dependent Po promoter

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The Universal Protein Resource (UniProt).

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Two proteins mediate class II ribonucleotide reductase activity in Pseudomonas aeruginosa: expression and transcriptional analysis of the aerobic enzymes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Adaptive radiation in a heterogeneous environment

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

The histidine utilization (hut) genes of Pseudomonas fluorescens SBW25 are active on plant surfaces, but are not required for competitive colonization of sugar beet seedlings.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

R: A Language for Data Analysis and Graphics

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01416.X

21 January 2018

Identifiers

10.1111/J.1462-2920.2007.01416.X

1 reference

Europe PubMed Central

1 September 2017

1 reference

Europe PubMed Central

1 September 2017

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