(Q38311082)

English

Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria

scientific article published on June 2000

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scholarly article

1 reference

Europe PubMed Central

2 September 2017

Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria (English)

1 reference

Europe PubMed Central

2 September 2017

Euglena gracilis

object named as

Euglena gracilis

1 reference

based on heuristic

inferred from title

author name string

Y Watanabe

1

1 reference

Europe PubMed Central

2 September 2017

M W Gray

2

1 reference

Europe PubMed Central

2 September 2017

language of work or name

0 references

publication date

1 June 2000

1 reference

Europe PubMed Central

2 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

2 September 2017

28

1 reference

Europe PubMed Central

2 September 2017

2342-2352

1 reference

Europe PubMed Central

2 September 2017

12

1 reference

Europe PubMed Central

2 September 2017

The genome sequence of Drosophila melanogaster

1 reference

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The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I

1 reference

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A telomerase component is defective in the human disease dyskeratosis congenita

1 reference

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The mechanism of pseudouridine synthase I as deduced from its interaction with 5-fluorouracil-tRNA.

1 reference

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Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA

1 reference

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Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA.

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Mitochondrial evolution

1 reference

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Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA.

1 reference

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U1 small nuclear RNA and spliceosomal introns in Euglena gracilis

1 reference

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Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.

1 reference

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Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

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1 reference

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1 reference

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X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions

1 reference

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Gar1p binds to the small nucleolar RNAs snR10 and snR30 in vitro through a nontypical RNA binding element.

1 reference

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The lysine-rich C-terminal repeats of the centromere-binding factor 5 (Cbf5) of Kluyveromyces lactis are not essential for function

1 reference

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The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase

1 reference

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Compilation of tRNA sequences and sequences of tRNA genes

1 reference

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The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

1 reference

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Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics

1 reference

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The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs

1 reference

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The yeast nucleolar protein Cbf5p is involved in rRNA biosynthesis and interacts genetically with the RNA polymerase I transcription factor RRN3.

1 reference

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A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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Factor requirements for transcription in the Archaeon Sulfolobus shibatae

1 reference

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Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs

1 reference

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Sno storm in the nucleolus: new roles for myriad small RNPs

1 reference

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Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

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Function and synthesis of small nucleolar RNAs

1 reference

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The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation

1 reference

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Intracellular localization and unique conserved sequences of three small nucleolar RNAs

1 reference

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Identification of new RNA modifying enzymes by iterative genome search using known modifying enzymes as probes.

1 reference

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The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions

1 reference

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Analysis of compositionally biased regions in sequence databases

1 reference

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Processing of pre-ribosomal RNA in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

6 September 2017

Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

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Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

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An essential yeast protein, CBF5p, binds in vitro to centromeres and microtubules

1 reference

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1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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NAP57, a mammalian nucleolar protein with a putative homolog in yeast and bacteria

1 reference

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Purification, cloning, and properties of the 16S RNA pseudouridine 516 synthase from Escherichia coli

1 reference

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1 reference

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1 reference

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6 September 2017

Purification, cloning, and properties of the tRNA psi 55 synthase from Escherichia coli.

1 reference

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6 September 2017

Genomic sequencing

1 reference

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6 September 2017

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1 reference

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Trypanosome mRNAs have unusual "cap 4" structures acquired by addition of a spliced leader

1 reference

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6 September 2017

Structure and expression of the Euglena gracilis nuclear gene coding for the translation elongation factor EF-1 alpha

1 reference

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6 September 2017

Eight small subunits of Euglena ribulose 1-5 bisphosphate carboxylase/oxygenase are translated from a large mRNA as a polyprotein

1 reference

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6 September 2017

'Touchdown' PCR to circumvent spurious priming during gene amplification

1 reference

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6 September 2017

Early evolution and the origin of eukaryotes

1 reference

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6 September 2017

The rapid generation of mutation data matrices from protein sequences

1 reference

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6 September 2017

Trypanosoma brucei spliced-leader RNA methylations are required for trans splicing in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

6 September 2017

DNA sequencing with chain-terminating inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

6 September 2017

Analysis and suppression of DNA polymerase pauses associated with a trinucleotide consensus.

1 reference

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14 September 2017

Processing of eukaryotic ribosomal RNA.

1 reference

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14 September 2017

An improved PCR method for walking in uncloned genomic DNA.

1 reference

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14 September 2017

Birth of the snoRNPs: the evolution of RNase MRP and the eukaryotic pre-rRNA-processing system

1 reference

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14 September 2017

Identification and suppression of secondary structures formed from deoxy-oligonucleotides during electrophoresis in denaturing polyacrylamide-gels

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14 September 2017

Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products

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14 September 2017

In Euglena, spliced-leader RNA (SL-RNA) and 5S rRNA genes are tandemly repeated

1 reference

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14 September 2017

Spliced leader RNA of trypanosomes: in vivo mutational analysis reveals extensive and distinct requirements for trans splicing and cap4 formation.

1 reference

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27 September 2017

Short leader sequences may be transferred from small RNAs to pre-mature mRNAs by trans-splicing in Euglena

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

27 September 2017

Identification of two Escherichia coli pseudouridine synthases that show multisite specificity for 23S RNA.

1 reference

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23 June 2018

A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli

1 reference

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23 June 2018

The rluC gene of Escherichia coli codes for a pseudouridine synthase that is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23 S ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

23 June 2018

Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs

1 reference

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23 June 2018

Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs

1 reference

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23 June 2018

Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family.

1 reference

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23 June 2018

Identification of a segment of the small nucleolar ribonucleoprotein-associated protein GAR1 that is sufficient for nucleolar accumulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

23 June 2018

Fourteen internal transcribed spacers in the circular ribosomal DNA of Euglena gracilis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

23 June 2018

Sequence and genetic analysis of NHP2: a moderately abundant high mobility group-like nuclear protein with an essential function in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

23 June 2018

Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides

1 reference

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23 June 2018

A candidate U1 small nuclear RNA for trypanosomatid protozoa.

1 reference

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31 August 2018

Critical aspartic acid residues in pseudouridine synthases.

1 reference

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31 August 2018

Trans-splicing and cis-splicing in the colourless Euglenoid, Entosiphon sulcatum.

1 reference

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31 August 2018

An evaluation of elongation factor 1 alpha as a phylogenetic marker for eukaryotes

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31 August 2018

The Nop60B gene of Drosophila encodes an essential nucleolar protein that functions in yeast

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31 August 2018

Birth of the snoRNPs: the evolution of the modification-guide snoRNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

Tubulin genes from AIDS-associated microsporidia and implications for phylogeny and benzimidazole sensitivity.

1 reference

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31 August 2018

Uniform amplification of a mixture of deoxyribonucleic acids with varying GC content.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

Molecular characterization of U3 small nucleolar RNA from the early diverging protist, Euglena gracilis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

Phylogenetic analysis of beta-tubulin sequences from amitochondrial protozoa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

One-hour downward capillary blotting of RNA at neutral pH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

Potential metal-binding domains in nucleic acid binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

A novel class of nucleolar RNAs from Tetrahymena.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102724

31 August 2018

Isolation and characterization of the small nucleolar ribonucleoprotein particle snR30 from Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/10871366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transfer RNA-pseudouridine synthetase Pus1 of Saccharomyces cerevisiae contains one atom of zinc essential for its native conformation and tRNA recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/10871366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of precursor rRNA in Euglena gracilis: identification of intermediates in the pathway to a highly fragmented large subunit rRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/10871366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning and characterization of the 23S RNA pseudouridine 2633 synthase from Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/10871366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The first determination of pseudouridine residues in 23S ribosomal RNA from hyperthermophilic Archaea Sulfolobus acidocaldarius

1 reference

https://pubmed.ncbi.nlm.nih.gov/10871366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sixteen discrete RNA components in the cytoplasmic ribosome of Euglena gracilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/10871366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

One-hour downward alkaline capillary transfer for blotting of DNA and RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/10871366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/28.12.2342

1 reference

Europe PubMed Central

2 September 2017

release_movnaqded5gxdmp7ouxk57yhxe

1 reference

https://api.fatcat.wiki/v0/release/movnaqded5gxdmp7ouxk57yhxe

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

2 September 2017

1 reference

Europe PubMed Central

2 September 2017

ResearchGate publication ID

0 references

Sitelinks

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