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CCTOP: a Consensus Constrained TOPology prediction web server.
scientific article published on 05 May 2015
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4489262
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943549%20AND%20SRC:MED&resulttype=core&format=json
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7 March 2020
title
CCTOP: a Consensus Constrained TOPology prediction web server
(English)
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4489262
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943549%20AND%20SRC:MED&resulttype=core&format=json
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7 March 2020
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web server
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László Dobson
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4489262
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943549%20AND%20SRC:MED&resulttype=core&format=json
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7 March 2020
Gábor E. Tusnády
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4489262
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7 March 2020
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István Reményi
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4489262
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5 May 2015
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4489262
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7 March 2020
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Nucleic Acids Research
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4489262
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943549%20AND%20SRC:MED&resulttype=core&format=json
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7 March 2020
volume
43
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4489262
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7 March 2020
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7 March 2020
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Creative Commons Attribution-NonCommercial 4.0 International
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11 November 2016
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cites work
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
6 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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stated in
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reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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stated in
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stated in
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retrieved
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1 reference
stated in
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retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
6 September 2017
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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stated in
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1 reference
stated in
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retrieved
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stated in
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retrieved
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1 reference
stated in
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retrieved
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1 reference
stated in
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retrieved
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stated in
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
6 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
6 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
27 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
23 June 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
23 June 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
31 August 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489262
retrieved
31 August 2018
FlyBase: genes and gene models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FNAR%2FGKV451
retrieved
21 January 2018
A tutorial on hidden Markov models and selected applications in speech recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FNAR%2FGKV451
retrieved
21 January 2018
Epitope insertion favors a six transmembrane domain model for the carboxy-terminal portion of the multidrug resistance-associated protein
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25943549
retrieved
12 December 2020
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inferred from PubMed ID database lookup
Topology mapping of the amino-terminal half of multidrug resistance-associated protein by epitope insertion and immunofluorescence
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stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/25943549
retrieved
12 December 2020
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Identifiers
DOI
10.1093/NAR/GKV451
1 reference
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Europe PubMed Central
PMCID
4489262
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943549%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
DBLP publication ID
journals/nar/DobsonRT15
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DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
4489262
1 reference
stated in
Europe PubMed Central
PMCID
4489262
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943549%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
PubMed ID
25943549
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Europe PubMed Central
PMCID
4489262
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943549%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
ResearchGate publication ID
276072803
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