(Q38668650)

5 September 2017

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes (English)

1 reference

5 September 2017

1 reference

L McCue

1

1 reference

5 September 2017

W Thompson

2

1 reference

5 September 2017

C Carmack

3

1 reference

5 September 2017

M P Ryan

4

1 reference

5 September 2017

J S Liu

5

1 reference

5 September 2017

V Derbyshire

6

1 reference

5 September 2017

C E Lawrence

7

1 reference

5 September 2017

language of work or name

English

0 references

publication date

1 February 2001

1 reference

5 September 2017

9

1 reference

inferred from page(s)

published in

Nucleic Acids Research

1 reference

5 September 2017

29

1 reference

5 September 2017

774-782

1 reference

5 September 2017

3

1 reference

Prediction of transcription regulatory sites in Archaea by a comparative genomic approach

5 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

The Pfam protein families database.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

EcoGene: a genome sequence database for Escherichia coli K-12.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

The complete genome sequence of Escherichia coli K-12

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Identifying protein-binding sites from unaligned DNA fragments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Sequence logos: a new way to display consensus sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

De novo purine nucleotide biosynthesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Bayesian inference on biopolymer models.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Expectation maximization algorithm for identifying protein-binding sites with variable lengths from unaligned DNA fragments

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Characterization of FadR, a global transcriptional regulator of fatty acid metabolism in Escherichia coli. Interaction with the fadB promoter is prevented by long chain fatty acyl coenzyme A

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

The fats of Escherichia coli during infancy and old age: regulation by global regulators, alarmones and lipid intermediates.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30389

FadR, transcriptional co-ordination of metabolic expediency

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11160901

12 December 2020

inferred from PubMed ID database lookup

Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11160901

12 December 2020

inferred from PubMed ID database lookup

Novel DNA-Sepharose purification of the FadR transcription factor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11160901

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/29.3.774

1 reference

5 September 2017

1 reference

5 September 2017

1 reference