(Q38679170)

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PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information

scientific article published on April 2001

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scholarly article

1 reference

Europe PubMed Central

5 September 2017

PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information (English)

1 reference

Europe PubMed Central

5 September 2017

protein folding

0 references

Werner G. Krebs

8

1 reference

Europe PubMed Central

5 September 2017

Sarah Teichmann

6

object named as

S A Teichmann

1 reference

Europe PubMed Central

5 September 2017

Mark Bender Gerstein

12

object named as

M Gerstein

1 reference

Europe PubMed Central

5 September 2017

author name string

J Qian

1

1 reference

Europe PubMed Central

5 September 2017

B Stenger

2

1 reference

Europe PubMed Central

5 September 2017

C A Wilson

3

1 reference

Europe PubMed Central

5 September 2017

J Lin

4

1 reference

Europe PubMed Central

5 September 2017

R Jansen

5

1 reference

Europe PubMed Central

5 September 2017

J Park

7

1 reference

Europe PubMed Central

5 September 2017

H Yu

9

1 reference

Europe PubMed Central

5 September 2017

V Alexandrov

10

1 reference

Europe PubMed Central

5 September 2017

N Echols

11

1 reference

Europe PubMed Central

5 September 2017

language of work or name

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publication date

1 April 2001

1 reference

Europe PubMed Central

5 September 2017

Nucleic Acids Research

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Europe PubMed Central

5 September 2017

29

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Europe PubMed Central

5 September 2017

1750-1764

1 reference

Europe PubMed Central

5 September 2017

8

1 reference

Europe PubMed Central

5 September 2017

Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast

1 reference

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Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome

1 reference

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A network of protein-protein interactions in yeast

1 reference

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The current excitement in bioinformatics-analysis of whole-genome expression data: how does it relate to protein structure and function?

1 reference

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The large-scale organization of metabolic networks

1 reference

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Classes of small-world networks

1 reference

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BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.

1 reference

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Estimating the number of protein folds and families from complete genome data

1 reference

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Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL

1 reference

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Gene ontology: tool for the unification of biology

1 reference

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6 September 2017

Caenorhabditis elegans

1 reference

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Systematic management and analysis of yeast gene expression data

1 reference

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1 reference

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6 September 2017

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

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DIP: the database of interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

The ASTRAL compendium for protein structure and sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

MMDB: 3D structure data in Entrez

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Integrating functional genomic information into the Saccharomyces genome database

1 reference

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6 September 2017

The COG database: a tool for genome-scale analysis of protein functions and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Large-scale analysis of the yeast genome by transposon tagging and gene disruption

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Genome-wide expression profiling in Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Advances in structural genomics

1 reference

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6 September 2017

The relationship between protein structure and function: a comprehensive survey with application to the yeast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Global response of Saccharomyces cerevisiae to an alkylating agent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Exploring the new world of the genome with DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

High density synthetic oligonucleotide arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

How representative are the known structures of the proteins in a complete genome? A comprehensive structural census

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Genome sequence of the nematode C. elegans: a platform for investigating biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

The FlyBase database of the Drosophila Genome Projects and community literature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Dissecting the regulatory circuitry of a eukaryotic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1 reference

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6 September 2017

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

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The transcriptional program of sporulation in budding yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

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A database of macromolecular motions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

A unified statistical framework for sequence comparison and structure comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

SMART, a simple modular architecture research tool: identification of signaling domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

PDBsum: a Web-based database of summaries and analyses of all PDB structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure

1 reference

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6 September 2017

Exploring the metabolic and genetic control of gene expression on a genomic scale

1 reference

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6 September 2017

How are model protein structures distributed in sequence space?

1 reference

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6 September 2017

A structural census of the current population of protein sequences

1 reference

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CATH--a hierarchic classification of protein domain structures

1 reference

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6 September 2017

Characterization of the yeast transcriptome

1 reference

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LPFC: an Internet library of protein family core structures

1 reference

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6 September 2017

Surprising similarities in structure comparison

1 reference

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1 reference

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6 September 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

6 September 2017

The ENZYME data bank

1 reference

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6 September 2017

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

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Rapid and sensitive protein similarity searches

1 reference

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One thousand families for the molecular biologist

1 reference

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Increased coverage of protein families with the blocks database servers

1 reference

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Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

1 reference

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14 September 2017

Comprehensive, comprehensible, distributed and intelligent databases: current status.

1 reference

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1 reference

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Hints of a language in junk DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

31 August 2018

Noncoding DNA, Zipf's law, and language.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

31 August 2018

Gene duplications in H. influenzae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31319

31 August 2018

Protein folds in the worm genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/11292848

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis relating expression level with protein subcellular localization

1 reference

https://pubmed.ncbi.nlm.nih.gov/11292848

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/29.8.1750

1 reference

Europe PubMed Central

5 September 2017

1 reference

Europe PubMed Central

5 September 2017

1 reference

Europe PubMed Central

5 September 2017

ResearchGate publication ID

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