(Q39543132)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

title

Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelix(Ala) variants (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

author name string

M C Nagan

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

P Beuning

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

K Musier-Forsyth

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

language of work or name

English

0 references

publication date

1 July 2000

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

volume

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

issue

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

page(s)

2527-2534

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

Experimental Measurement of Aromatic Stacking Affinities in the Context of Duplex DNA

7 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Non-Watson-Crick base pairs in RNA-protein recognition

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Synthesis and pairing properties of oligoribonucleotide analogues containing a metal-binding site attached to beta-D-allofuranosyl cytosine

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Structural studies on tRNA acceptor stem microhelices: exchange of the discriminator base A73 for G in human tRNALeu switches the acceptor specificity from leucine to serine possibly by decreasing the stability of the terminal G1-C72 base pair

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Base-base and deoxyribose-base stacking interactions in B-DNA and Z-DNA: a quantum-chemical study

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

VMD: visual molecular dynamics

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

The 3'-terminal end (NCCA) of tRNA determines the structure and stability of the aminoacyl acceptor stem

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Is there a discriminator site in transfer RNA?

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Defining the structure of irregular nucleic acids: conventions and principles

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

13 September 2017

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp)

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Enzymatic aminoacylation of single-stranded RNA with an RNA cofactor

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Universal rules and idiosyncratic features in tRNA identity

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

The crystal structure of the ternary complex of T.thermophilus seryl-tRNA synthetase with tRNA(Ser) and a seryl-adenylate analogue reveals a conformational switch in the active site

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Hydrogen bonding and stacking of DNA bases: a review of quantum-chemical ab initio studies.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Structural features of protein-nucleic acid recognition sites

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Discriminating among the discriminator bases of tRNAs

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Base stacking and hydrogen bonding in protonated cytosine dimer: the role of molecular ion-dipole and induction interactions.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Molecular interactions of pyrimidines, purines, and some other heteroaromatic compounds in aqueous media

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Aminoacylation of RNA minihelices with alanine.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Aminoacylation of alanine minihelices. “Discriminator” base modulates transition state of single turnover reaction

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102696

A nucleotide that enhances the charging of RNA minihelix sequence variants with alanine

21 August 2018

1 reference

12 December 2020

Nonplanar DNA Base Pairs

1 reference

12 December 2020

Identification of discriminator base atomic groups that modulate the alanine aminoacylation reaction

1 reference

12 December 2020

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

12 December 2020

Yeast tRNAAsp recognition by its cognate class II aminoacyl-tRNA synthetase

1 reference

12 December 2020

Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid

1 reference

12 December 2020

A simple structural feature is a major determinant of the identity of a transfer RNA

1 reference

12 December 2020

The interaction of nucleosides in aqueous solution

1 reference

12 December 2020

A Sedimentation Equilibrium Study of the Association of Purine in Aqueous Solutions*

1 reference

12 December 2020

NMR evidence for helix geometry modifications by a G-U wobble base pair in the acceptor arm of E. coli tRNAAla

1 reference

12 December 2020

Functional contacts of a transfer RNA synthetase with 2′-hydroxyl groups in the RNA minor groove

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/28.13.2527

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

DBLP publication ID

journals/nar/NaganBMC00

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10871402%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

PubMed publication ID

10871402

1 reference