(Q39656703)

13 September 2017

Alternative expression analysis by RNA sequencing (English)

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13 September 2017

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Gregg B Morin

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Obi Griffith

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Trevor J Pugh

object named as

Trevor J Pugh

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author name string

Jill Mwenifumbo

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Rodrigo Goya

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A Sorana Morrissy

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Ryan D Morin

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Richard Corbett

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Michelle J Tang

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Ying-Chen Hou

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Gordon Robertson

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Suganthi Chittaranjan

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Adrian Ally

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Jennifer K Asano

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Susanna Y Chan

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Haiyan I Li

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Helen McDonald

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Kevin Teague

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Yongjun Zhao

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Thomas Zeng

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Allen Delaney

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Martin Hirst

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Steven J M Jones

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Isabella T Tai

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Marco A Marra

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12 September 2010

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843-847

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10

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describes a project that uses

13 September 2017

MIP-101

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MIP/5FU

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exact match

https://scigraph.springernature.com/pub.10.1038/nmeth.1503

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cites work

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Statistical inferences for isoform expression in RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

mRNA-Seq whole-transcriptome analysis of a single cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Stem cell transcriptome profiling via massive-scale mRNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Alternative isoform regulation in human tissue transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

A statistical method for the detection of alternative splicing using RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Annotating genomes with massive-scale RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Global and unbiased detection of splice junctions from RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Fast and SNP-tolerant detection of complex variants and splicing in short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Isolation and characterization of an undifferentiated human colon carcinoma cell line (MIP-101).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Genome-wide expression analysis of therapy-resistant tumors reveals SPARC as a novel target for cancer therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Cancer-associated regulation of alternative splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

De novo transcriptome assembly with ABySS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Multiple alternative splicing markers for ovarian cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

ALEXA: a microarray design platform for alternative expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1503

Identification of alternative splicing markers for breast cancer

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20835245

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SIMPLE34: an improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20835245

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.1503

1 reference

13 September 2017

1 reference