(Q40270412)

19 September 2017

Deciphering conformational transitions of proteins by small angle X-ray scattering and normal mode analysis (English)

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X-ray scattering techniques

19 September 2017

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Alejandro Panjkovich

1

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Dmitri Svergun

object named as

Dmitri I Svergun

series ordinal

2

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language of work or name

English

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publication date

27 November 2015

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Physical Chemistry Chemical Physics

19 September 2017

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19 September 2017

18

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19 September 2017

5707-5719

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19 September 2017

8

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Molecular dynamics simulations of biomolecules

19 September 2017

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

On the relationship between low-frequency normal modes and the large-scale conformational changes of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Conformational change of proteins arising from normal mode calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Characterization of elements involved in allosteric light regulation of phosphodiesterase activity by comparison of different functional BlrP1 states

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Analysis of domain motions by approximate normal mode calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Global rigid body modeling of macromolecular complexes against small-angle scattering data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

SCOP2 prototype: a new approach to protein structure mining

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

CATH: comprehensive structural and functional annotations for genome sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Multidimensional binary search trees used for associative searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Normal modes for predicting protein motions: a comprehensive database assessment and associated Web tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

A solution for the best rotation to relate two sets of vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Calmodulin and STIM proteins: Two major calcium sensors in the cytoplasm and endoplasmic reticulum

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Studies on the conformational changes in the bacterial cell wall biosynthetic enzyme UDP-N-acetylglucosamine enolpyruvyltransferase (MurA).

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Deubiquitinating function of ataxin-3: insights from the solution structure of the Josephin domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Structure validation of the Josephin domain of ataxin-3: conclusive evidence for an open conformation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

BlockMaster: partitioning protein kinase structures using normal-mode analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Characterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Review of the fundamental theories behind small angle X-ray scattering, molecular dynamics simulations, and relevant integrated application

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Interpretation of solution x-ray scattering by explicit-solvent molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Ambiguity assessment of small-angle scattering curves from monodisperse systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

New developments in the ATSAS program package for small-angle scattering data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

Collective variable description of small-amplitude conformational fluctuations in a globular protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5CP04540A

https://api.fatcat.wiki/v0/release/rckis2dqkfcbtomo42iuojnx6u

21 January 2018

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30 July 2022

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Fatcat ID

release_rckis2dqkfcbtomo42iuojnx6u

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Fatcat

https://api.fatcat.wiki/v0/release/rckis2dqkfcbtomo42iuojnx6u

mapped directly with Wikidata item

30 July 2022

based on heuristic

1 reference

https://api.fatcat.wiki/v0/release/rckis2dqkfcbtomo42iuojnx6u