(Q40418747)

20 September 2017

Does 5S RNA from E. coli have a pseudoknotted structure? (English)

1 reference

20 September 2017

0 references

Göringer HU

1

1 reference

PMCID

311763

20 September 2017

Wagner R

series ordinal

2

1 reference

PMCID

311763

20 September 2017

language of work or name

1 reference

1 September 1986

1 reference

20 September 2017

Nucleic Acids Research

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20 September 2017

14

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20 September 2017

7473-7485

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20 September 2017

18

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Two distinct conformations of rat liver ribosomal 5S RNA.

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

A structural model of 5S RNA from E. coli based on intramolecular crosslinking evidence.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Mapping tRNA structure in solution using double-strand-specific ribonuclease V1 from cobra venom

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Effect of 2'-O-methylation on the structure of mammalian 5.8S rRNAs and the 5.8S-28S rRNA junction

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

NMR evidence for the existence of two native conformations of 5S RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Three-dimensional structural model of eubacterial 5S RNA that has functional implications

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

A proton-coupled conformational switch of Escherichia coli 5S ribosomal RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Oligonucleotide directed mutagenesis ofEscherichia coli5S ribosomal RNA: construction of mutant and structural analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

A new principle of RNA folding based on pseudoknotting

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Five pseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosaic virus RNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Analysis of a sequence region of 5S RNA from E. coli cross-linked in situ to the ribosomal protein L25.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Structure and function of 5S and 5.8 S RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Determination of base pairing in Escherichia coil and Bacillus stearothermophilus 5S RN As by infrared spectroscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

A ribonuclease-resistant region of 5S RNA and its relation to the RNA binding sites of proteins L18 and L25

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Direct chemical method for sequencing RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Pathway-dependent refolding of E. coli 5S rRNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Transfer RNA: Molecular Structure, Sequence, and Properties

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Structure of 5 S ribosomal RNA from Escherichia coli: Identification of kethoxal-reactive sites in the A and B conformations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Does unpaired adenosine-66 from helix II of Escherichia coli 5S RNA bind to protein L18?

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Escherichia coli 5S RNA A and B conformers. Characterisation by enzymatic and chemical methods

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Alternative conformers of 5S ribosomal RNA and their biological relevance.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Does 5S RNA function by a switch between two secondary structures?

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

The three-dimensional folding of the tRNA-like structure of tobacco mosaic virus RNA. A new building principle applied twice.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Dimers of 5 S RNA and 5.8 S RNA in low molecular weight RNA preparations.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311763

Binding sites of ribosomal proteins on prokaryotic 5S RNAs: a study with ribonucleases

20 August 2018

1 reference

12 December 2020

Open and closed 5 S ribosomal RNA, the only two universal structures encoded in the nucleotide sequences

1 reference

12 December 2020

Structural analysis of the A and B conformers of escherichia coli 5 S ribosomal RNA by infrared spectroscopy

1 reference

12 December 2020

5S RNA secondary structure

1 reference

12 December 2020

Comparison of Escherichia coli tRNAPhe in the Free State, in the Ternary Complex and in the Ribosomal A and P Sites by Chemical Probing

1 reference

12 December 2020

A characterization of the low temperature structural transition of Escherichia coli 5 S RNA by partial enzymatic digestion

1 reference

12 December 2020

The effect of tRNA binding on the structure of 5 S RNA in Escherichia coli. A chemical modification study

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/14.18.7473

1 reference

20 September 2017

1 reference

20 September 2017

1 reference

PMCID

311763