(Q41018539)

25 September 2017

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps (English)

1 reference

25 September 2017

1

1 reference

25 September 2017

2

1 reference

25 September 2017

3

Matthew Berriman

1 reference

PMCID

2884544

25 September 2017

language of work or name

1 reference

13 April 2010

1 reference

25 September 2017

1 reference

25 September 2017

11

1 reference

25 September 2017

R41

1 reference

25 September 2017

4

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2010-11-4-r41

25 September 2017

0 references

cites work

De novo assembly of human genomes with massively parallel short read sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

Genomics. Genome project standards in a new era of sequencing

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

The Sequence Alignment/Map format and SAMtools

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

Evaluation of next generation sequencing platforms for population targeted sequencing studies

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

ABySS: a parallel assembler for short read sequence data

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

Accurate whole human genome sequencing using reversible terminator chemistry

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

26 September 2017

The phusion assembler

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

ARACHNE: a whole-genome shotgun assembler

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

SSAHA: a fast search method for large DNA databases

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

Automated finishing with autofinish

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

Toward a complete human genome sequence

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

A new DNA sequence assembly program

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

ABACAS: algorithm-based automatic contiguation of assembled sequences

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2884544

OSP: a computer program for choosing PCR and DNA sequencing primers

17 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20388197

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2010-11-4-R41

1 reference

PMCID

2884544

Dimensions Publication ID

25 September 2017

0 references

1 reference

25 September 2017

1 reference

PMCID

2884544