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Simulating DNA at low resolution
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scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
review article
1 reference
stated in
Europe PubMed Central
title
Simulating DNA at low resolution
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
author name string
Olson WK
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
publication date
1 April 1996
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
published in
Current Opinion in Structural Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
volume
6
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
page(s)
242-256
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
issue
2
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
cites work
Nucleic acid structure analysis. Mathematics for local Cartesian and helical structure parameters that are truly comparable between structures.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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inferred from DOI database lookup
Comparison of rotation models for describing DNA conformations: application to static and polymorphic forms
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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inferred from DOI database lookup
B-DNA twisting correlates with base-pair morphology.
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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The assessment of the geometry of dinucleotide steps in double-helical DNA; a new local calculation scheme.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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Molecular mechanics calculations of dA12.dT12 and of the curved molecule d(GCTCGAAAAA)4.d(TTTTTCGAGC)4
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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A general procedure for generation of curved DNA molecules.
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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An extension of the rigorous base-unit oriented description of nucleic acid structures
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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inferred from DOI database lookup
The ten helical twist angles of B-DNA.
1 reference
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Crossref
reference URL
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7 January 2021
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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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The effect of mathematics and coordinate system on comparability and "dependencies" of nucleic acid structure parameters.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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Nucleic acid structure analysis: a users guide to a collection of new analysis programs
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Flexing and folding double helical DNA.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Stereochemical basis of DNA bending by transcription factors
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Statistical analysis of DNA duplex structural features
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Translational positioning of nucleosomes on DNA: the role of sequence-dependent isotropic DNA bending stiffness.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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Modeling superhelical DNA: recent analytical and dynamic approaches.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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Lattice ribbons: A model of double-stranded polymers
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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Electrostatic effects in short superhelical DNA
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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inferred from DOI database lookup
Knotting and supercoiling in circular DNA: A model incorporating the effect of added salt
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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The influence of salt on the structure and energetics of supercoiled DNA
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Modeling of long-range electrostatic interactions in DNA.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Thermodynamics of the first transition in writhe of a small circular DNA by Monte Carlo simulation.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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What is the basis of sequence-directed curvature in DNAs containing A tracts?
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Self-fitting and self-modifying properties of the B-DNA molecule
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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inferred from DOI database lookup
The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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inferred from DOI database lookup
Polyelectrolyte effects in DNA condensation by polyamines.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
On higher buckling transitions in supercoiled DNA.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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inferred from DOI database lookup
Solvent effects on supercoiled DNA dynamics explored by Langevin dynamics simulations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Configurational statistics of the DNA duplex: extended generator matrices to treat the rotations and translations of adjacent residues.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Modulation of intramolecular interactions in superhelical DNA by curved sequences: a Monte Carlo simulation study
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Spatial translational motions of base pairs in DNA molecules: application of the extended matrix generator method
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Static contributions to the persistence length of DNA and dynamic contributions to DNA curvature.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Action at a distance in supercoiled DNA: effects of sequence on slither, branching, and intramolecular concentration
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Effect of anisotropy of the bending rigidity on the supercoiling free energy of small circular DNAs.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Effects of localized bending on DNA supercoiling.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Computer simulation of protein-induced structural changes in closed circular DNA
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Action at a distance: DNA-looping and initiation of transcription
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Crystal structure of a yeast TBP/TATA-box complex
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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Sequence Elements Responsible for DNA Curvature
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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Computer simulation of the directional displacement of rod-shaped, arc-shaped, and circular objects in an array of obstacles, representing a simple model for the gel electrophoresis of small DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
based on heuristic
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A parallel DNA triplex as a model for the intermediate in homologous recombination.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0
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7 January 2021
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Identifiers
DOI
10.1016/S0959-440X(96)80082-0
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
PubMed ID
8728659
1 reference
stated in
Europe PubMed Central
PubMed ID
8728659
retrieved
26 September 2017
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