(Q42002467)

English

Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators.

scientific article published on October 1998

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scholarly article

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Europe PubMed Central

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5 December 2019

Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators (English)

1 reference

Europe PubMed Central

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5 December 2019

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1

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5 December 2019

author name string

Holmberg S

2

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5 December 2019

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publication date

1 October 1998

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5 December 2019

The EMBO Journal

1 reference

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5 December 2019

17

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5 December 2019

6028-6038

1 reference

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5 December 2019

20

1 reference

Europe PubMed Central

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5 December 2019

Xenopus TFIIIA gene transcription is dependent on cis-element positioning and chromatin structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Architectural specificity in chromatin structure at the TATA box in vivo: nucleosome displacement upon beta-phaseolin gene activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Histone acetylation and transcriptional regulatory mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Chromatin remodeling machines: similar motors, ulterior motives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

ADA1, a novel component of the ADA/GCN5 complex, has broader effects than GCN5, ADA2, or ADA3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Silent information regulator protein complexes in Saccharomyces cerevisiae: a SIR2/SIR4 complex and evidence for a regulatory domain in SIR4 that inhibits its interaction with SIR3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Comparative amino acid sequence analysis of the C6 zinc cluster family of transcriptional regulators.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

The general transcription factors of RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Cha4p of Saccharomyces cerevisiae activates transcription via serine/threonine response elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Mechanisms of transcriptional activation in vivo: two steps forward

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A new class of activation-defective TATA-binding protein mutants: evidence for two steps of transcriptional activation in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

ADA5/SPT20 links the ADA and SPT genes, which are involved in yeast transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Chromatin remodeling during Saccharomyces cerevisiae ADH2 gene activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Structural and functional analysis of yeast putative adaptors. Evidence for an adaptor complex in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Repression and activation by multiprotein complexes that alter chromatin structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

The amino-terminal tails of the core histones and the translational position of the TATA box determine TBP/TFIIA association with nucleosomal DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A regulatory element in the CHA1 promoter which confers inducibility by serine and threonine on Saccharomyces cerevisiae genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Transcriptional activation: a complex puzzle with few easy pieces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

The basics of basal transcription by RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Facilitated binding of TATA-binding protein to nucleosomal DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A highly conserved domain of RNA polymerase II shares a functional element with acidic activation domains of upstream transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

ADA3, a putative transcriptional adaptor, consists of two separable domains and interacts with ADA2 and GCN5 in a trimeric complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Interaction with RAP74 subunit of TFIIF is required for transcriptional activation by serum response factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Basal components of the transcription apparatus (RNA polymerase II, TATA-binding protein) contain activation domains: is the repetitive C-terminal domain (CTD) of RNA polymerase II a "portable enhancer domain"?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Transcriptional activation. Tuning-up transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

The TBP-TFIIA interaction in the response to acidic activators in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

The role of a positioned nucleosome at the Drosophila melanogaster hsp26 promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A class of activation domains interacts directly with TFIIA and stimulates TFIIA-TFIID-promoter complex assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Occurrence of a catabolic L-serine (L-threonine) deaminase in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

The relationship of regulatory proteins and DNase I hypersensitive sites in the yeast GAL1-10 genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Replication and segregation of plasmids containing cis-acting regulatory sites of silent mating-type genes in Saccharomyces cerevisiae are controlled by the SIR genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A unique structure at the carboxyl terminus of the largest subunit of eukaryotic RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Nucleosome loss activates yeast downstream promoters in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Molecular genetics of serine and threonine catabolism in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Fine analysis of the chromatin structure of the yeast SUC2 gene and of its changes upon derepression. Comparison between the chromosomal and plasmid-inserted genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Recombinant yeast TFIID, a general transcription factor, mediates activation by the gene-specific factor USF in a chromatin assembly assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A simple method for generating single-stranded DNA probes labeled to high activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Yeast alpha 2 repressor positions nucleosomes in TRP1/ARS1 chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Nucleoprotein hybridization: a method for isolating active and inactive genes as chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Transcription-induced nucleosome 'splitting': an underlying structure for DNase I sensitive chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Activation domains of stably bound GAL4 derivatives alleviate repression of promoters by nucleosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

A functional role for nucleosomes in the repression of a yeast promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

5 June 2018

Increased recruitment of TATA-binding protein to the promoter by transcriptional activation domains in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170929

18 August 2018

RNA polymerase II carboxy-terminal domain contributes to the response to multiple acidic activators in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional requirements for the chromatin transition at the PHO5 promoter in Saccharomyces cerevisiae upon PHO5 activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of native complexes containing the yeast coactivator/repressor proteins NGG1/ADA3 and ADA2

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of general transcription factor TFIIB to an acidic activating region

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specific interaction between the nonphosphorylated form of RNA polymerase II and the TATA-binding protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stimulation of RNA polymerase II transcription initiation by recruitment of TBP in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin structure of the yeast FBP1 gene: transcription-dependent changes in the regulatory and coding regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNase I sensitivity of the chromatin of the yeast SUC2 gene for invertase

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA polymerase II C-terminal repeat influences response to transcriptional enhancer signals

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of Physical Interactions of the Putative Transcriptional Adaptor, ADA2, with Acidic Activation Domains and TATA-binding Protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contact with a component of the polymerase II holoenzyme suffices for gene activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774346

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/EMBOJ/17.20.6028

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9774346%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9774346%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9774346%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

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