(Q42562663)

2 November 2017

Stochastic reaction-diffusion processes with embedded lower-dimensional structures (English)

1 reference

2 November 2017

2

1 reference

2 November 2017

Siyang Wang

1

1 reference

2 November 2017

Stefan Hellander

series ordinal

3

1 reference

2 November 2017

Per Lötstedt

series ordinal

4

1 reference

2 November 2017

26 October 2013

1 reference

Bulletin of Mathematical Biology

2 November 2017

35

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

2 November 2017

76

1 reference

2 November 2017

4

1 reference

2 November 2017

819-853

1 reference

maintained by WikiProject

2 November 2017

WikiProject Mathematics

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cites work

Single molecule simulations in complex geometries with embedded dynamic one-dimensional structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Hybrid spatial Gillespie and particle tracking simulation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Reaction-diffusion master equation in the microscopic limit

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

STEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologies

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Using gene expression noise to understand gene regulation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

The two-regime method for optimizing stochastic reaction-diffusion simulations

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Stochastic reaction-diffusion kinetics in the microscopic limit

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Detailed simulations of cell biology with Smoldyn 2.1

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Spatio-temporal correlations can drastically change the response of a MAPK pathway

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Nonspecifically bound proteins spin while diffusing along DNA.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

An end to 40 years of mistakes in DNA-protein association kinetics?

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Nature, nurture, or chance: stochastic gene expression and its consequences

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Probing transcription factor dynamics at the single-molecule level in a living cell

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Efficient step size selection for the tau-leaping simulation method

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Stochastic reaction-diffusion simulation with MesoRD.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Molecular motors: strategies to get along

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

The molecular motor toolbox for intracellular transport

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Stochastic gene expression in a single cell

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

MAP kinase cascade signaling and endocytic trafficking: a marriage of convenience?

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

The movement of kinesin along microtubules

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Facilitated target location in biological systems

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

A comparison of bimolecular reaction models for stochastic reaction-diffusion systems.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

The lac repressor displays facilitated diffusion in living cells.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Reactive boundary conditions for stochastic simulations of reaction-diffusion processes.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

The slow-scale stochastic simulation algorithm.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Efficient attenuation of stochasticity in gene expression through post-transcriptional control.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4539382

Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

16 August 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-013-9910-X

A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-013-9910-X

Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-013-9910-X

Random Walks on Lattices. II

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11538-013-9910-X

The future is noisy: the role of spatial fluctuations in genetic switching

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24163106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S11538-013-9910-X

1 reference

2 November 2017

1 reference

2 November 2017

PubMed publication ID

24163106

1 reference