(Q43268971)

17 November 2017

Computing the shortest elementary flux modes in genome-scale metabolic networks (English)

1 reference

17 November 2017

1 reference

1

1 reference

17 November 2017

3

1 reference

17 November 2017

Adam Podhorski

2

0 references

John E. Beasley

object named as

John E Beasley

series ordinal

5

0 references

Christoph Kaleta

object named as

Christoph Kaleta

series ordinal

4

0 references

Stefan Schuster

series ordinal

6

object named as

Stefan Schuster

1 reference

17 November 2017

Francisco J Planes

7

1 reference

PubMed ID

19793869

17 November 2017

language of work or name

English

0 references

publication date

30 September 2009

1 reference

17 November 2017

1 reference

17 November 2017

25

1 reference

17 November 2017

3158-3165

1 reference

17 November 2017

23

1 reference

Modes and cuts in metabolic networks: complexity and algorithms

17 November 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Recovering metabolic pathways via optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

The complete genome sequence of Escherichia coli K-12

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Biology of L-lysine overproduction byCorynebacterium glutamicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Physiological control of metabolic flux: the requirement for multisite modulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Computation of elementary modes: a unifying framework and the new binary approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Metabolic analysis of Corynebacterium glutamicum during lactate and succinate productions under oxygen deprivation conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Combinatorial complexity of pathway analysis in metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Algorithmic approaches for computing elementary modes in large biochemical reaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Structural and functional analysis of cellular networks with CellNetAnalyzer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Pathway analysis, engineering, and physiological considerations for redirecting central metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Computer-aided synthesis of biochemical pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Dihydroxyacetone kinases in Saccharomyces cerevisiae are involved in detoxification of dihydroxyacetone

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

A strategy for increasing an in vivo flux by genetic manipulations. The tryptophan system of yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Evolution of cross-feeding in microbial populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Genome-scale models of microbial cells: evaluating the consequences of constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

ON ELEMENTARY FLUX MODES IN BIOCHEMICAL REACTION SYSTEMS AT STEADY STATE

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Understanding the roadmap of metabolism by pathway analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Integrated network reconstruction, visualization and analysis using YANAsquare.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Role of GldA in dihydroxyacetone and methylglyoxal metabolism of Escherichia coli K12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Large-scale computation of elementary flux modes with bit pattern trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Metabolic flux and metabolic network analysis of Penicillium chrysogenum using 2D [13C, 1H] COSY NMR measurements and cumulative bondomer simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Metatool 5.0: fast and flexible elementary modes analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Metabolic engineering of Escherichia coli and Corynebacterium glutamicum for biotechnological production of organic acids and amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

Kinetic flux profiling of nitrogen assimilation in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP564

10.1093/BIOINFORMATICS/BTP564

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/FigueiredoPRKBSP09

17 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

19793869