(Q44038161)

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Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution

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scholarly article

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Europe PubMed Central

29 November 2017

Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution (English)

1 reference

Europe PubMed Central

29 November 2017

Escherichia coli

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1

object named as

Wonpil Im

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Europe PubMed Central

29 November 2017

author name string

Benoît Roux

2

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Europe PubMed Central

29 November 2017

language of work or name

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publication date

1 June 2002

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Europe PubMed Central

29 November 2017

Journal of Molecular Biology

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Europe PubMed Central

29 November 2017

319

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Europe PubMed Central

29 November 2017

1177-1197

1 reference

Europe PubMed Central

29 November 2017

5

1 reference

Europe PubMed Central

29 November 2017

Permeation of hydrophilic molecules through the outer membrane of gram-negative bacteria. Review on bacterial porins

1 reference

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Biophysics of the structure and function of porins

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Structure of porin refined at 1.8 A resolution

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Crystal structures explain functional properties of two E. coli porins

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Structural and functional characterization of OmpF porin mutants selected for larger pore size. II. Functional characterization

1 reference

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Brownian dynamics simulation of ion flow through porin channels.

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Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation

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On the stability and plastic properties of the interior L3 loop in R. capsulatus porin. A molecular dynamics study

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L3 loop-mediated mechanisms of pore closing in porin: a molecular dynamics perturbation approach.

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Computer simulations of the OmpF porin from the outer membrane of Escherichia coli

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Voltage-gating of Escherichia coli porin: a cystine-scanning mutagenesis study of loop 3.

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Native Escherichia coli OmpF porin surfaces probed by atomic force microscopy

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Voltage and pH-induced channel closure of porin OmpF visualized by atomic force microscopy

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Molecular Architecture and Electrostatic Properties of a Bacterial Porin

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7 January 2021

Electrostatic properties of two porin channels from Escherichia coli

1 reference

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7 January 2021

Computational observation of an ion permeation through a channel protein.

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7 January 2021

A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer

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A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels

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Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program

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Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program

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Electrostatically balanced subnanometer imaging of biological specimens by atomic force microscope

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CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

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Comparison of simple potential functions for simulating liquid water

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Valence selectivity of the gramicidin channel: a molecular dynamics free energy perturbation study

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Structure and dynamics of hydrated ions

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Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer

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Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer

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Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane

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10.1016/S0022-2836(02)00380-7

1 reference

Europe PubMed Central

29 November 2017

1 reference

Europe PubMed Central

29 November 2017

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