(Q44482159)

English

Downstream DNA sequence effects on transcription elongation. Allosteric binding of nucleoside triphosphates facilitates translocation via a ratchet motion

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

3 December 2017

Downstream DNA sequence effects on transcription elongation. Allosteric binding of nucleoside triphosphates facilitates translocation via a ratchet motion (English)

1 reference

Europe PubMed Central

3 December 2017

author name string

Shannon F Holmes

1

1 reference

Europe PubMed Central

3 December 2017

Dorothy A Erie

2

1 reference

Europe PubMed Central

3 December 2017

language of work or name

0 references

publication date

16 June 2003

1 reference

Europe PubMed Central

3 December 2017

number of pages

12

1 reference

based on heuristic

inferred from page(s)

Journal of Biological Chemistry

1 reference

Europe PubMed Central

3 December 2017

278

1 reference

Europe PubMed Central

3 December 2017

35597-35608

1 reference

Europe PubMed Central

3 December 2017

37

1 reference

Europe PubMed Central

3 December 2017

Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Analysis of RNA chain elongation and termination by Saccharomyces cerevisiae RNA polymerase III.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Nonequilibrium mechanism of transcription termination from observations of single RNA polymerase molecules

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

A branched pathway in the early stage of transcription by Escherichia coli RNA polymerase.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

RNA polymerase slides home: pause and termination site recognition

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Effects of neutral salts on RNA chain elongation and pausing by Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

RNA polymerase II promoter-proximal pausing upregulates c-fos gene expression

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Definition of transcriptional pause elements in fission yeast.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Terminator-distal sequences determine the in vitro efficiency of the early terminators of bacteriophages T3 and T7.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving polymin P precipitation and DNA-cellulose chromatography

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Termination of transcription by Escherichia coli ribonucleic acid polymerase in vitro. Effect of altered reaction conditions and mutations in the enzyme protein on termination with T7 and T3 deoxyribonucleic acids.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Shifting RNA polymerase into overdrive

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Factor-independent termination of transcription in a stretch of deoxyadenosine residues in the template DNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Transcription termination at intrinsic terminators: the role of the RNA hairpin

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

The mechanism of intrinsic transcription termination.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Regulatory sequences involved in the promotion and termination of RNA transcription

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

A structural model of transcription elongation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Streptolydigin resistance can be conferred by alterations to either the beta or beta' subunits of Bacillus subtilis RNA polymerase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Classification and evolution of P-loop GTPases and related ATPases

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

The case for a common ancestor: kinesin and myosin motor proteins and G proteins

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Three-dimensional view of the surface motif associated with the P-loop structure: cis and trans cases of convergent evolution.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

NTP-driven translocation by human RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Mechanism of ribonucleic acid chain initiation. 1. A non-steady-state study of ribonucleic acid synthesis without enzyme turnover

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM--a flexible, portable system.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Analysis of progress curves by simulations generated by numerical integration

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Structure of the ArsA ATPase: the catalytic subunit of a heavy metal resistance pump

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

A tetrahedral intermediate in the EPSP synthase reaction observed by rapid quench kinetics

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Can and Should the Universities Survive?

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304496200

21 January 2018

Identifiers

10.1074/JBC.M304496200

1 reference

Europe PubMed Central

3 December 2017

1 reference

Europe PubMed Central

3 December 2017

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q44482159&oldid=2025498326"