(Q47264973)

14 June 2018

title

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel Limnoperna fortunei (English)

1 reference

14 June 2018

Nicholas Costa Barroso Lima

1 reference

1 reference

1 reference

Thomas Dan Otto

3

0 references

5

Nicholas Costa Barroso Lima

1 reference

14 June 2018

Francesco Dondero

Francesco Dondero

2

1 reference

ORCID Public Data File 2021

Francisco Prosdocimi

8

Francisco Prosdocimi

1 reference

14 June 2018

Juliana Alves Americo

6

Juliana Alves Americo

1 reference

14 June 2018

author name string

Marcela Uliano-Silva

1

1 reference

14 June 2018

Igor Costa

4

1 reference

14 June 2018

Camila Junqueira Mazzoni

7

1 reference

14 June 2018

Mauro de Freitas Rebelo

9

1 reference

14 June 2018

language of work or name

1 reference

1 February 2018

1 reference

14 June 2018

full work available at URL

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836269

1 reference

21 March 2022

1 reference

14 June 2018

volume

7

1 reference

14 June 2018

issue

2

1 reference

14 June 2018

Creative Commons Attribution 4.0 International

copyright license

1 reference

Crossref

https://api.crossref.org/v1/works/10.1093/GIGASCIENCE/GIX128

copyright status

copyrighted

0 references

maintained by WikiProject

WikiProject Invasion Biology

0 references

cites work

The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum).

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

A CRISPR-Cas9 gene drive system targeting female reproduction in the malaria mosquito vector Anopheles gambiae

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Gene discovery through transcriptome sequencing for the invasive mussel Limnoperna fortunei

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Trimmomatic: a flexible trimmer for Illumina sequence data

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

L_RNA_scaffolder: scaffolding genomes with transcripts.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The MaSuRCA genome assembler

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Assessment of toxicity of dissolved and microencapsulated biocides for control of the Golden Mussel Limnoperna fortunei.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The oyster genome reveals stress adaptation and complexity of shell formation

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Exploiting sparseness in de novo genome assembly

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Draft genome of the pearl oyster Pinctada fucata: a platform for understanding bivalve biology

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

ProtTest 3: fast selection of best-fit models of protein evolution

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The sequence and de novo assembly of the giant panda genome

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The Sequence Alignment/Map format and SAMtools

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Fast and accurate short read alignment with Burrows-Wheeler transform

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Dscam and DSCAM: complex genes in simple animals, complex animals yet simple genes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Toll-like receptors--taking an evolutionary approach

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Thrombospondin-1 promotes cellular adherence of gram-positive pathogens via recognition of peptidoglycan

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The death domain superfamily in intracellular signaling of apoptosis and inflammation

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Expansion of protein domain repeats

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

De novo identification of repeat families in large genomes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Automated de novo identification of repeat sequence families in sequenced genomes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Intraspecific violation of genetic colinearity and its implications in maize

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Tandem repeats finder: a program to analyze DNA sequences

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

SMART, a simple modular architecture research tool: identification of signaling domains

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

The thrombospondin type 1 repeat superfamily

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Microencapsulated BioBullets for the control of biofouling zebra mussels

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836269

Modeling amino acid replacement

14 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29267857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Scallop genome provides insights into evolution of bilaterian karyotype and development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29267857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GIGASCIENCE/GIX128

1 reference

14 June 2018

PMC publication ID

5836269

1 reference

14 June 2018

PubMed publication ID

29267857

1 reference

14 June 2018