(Q48139999)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15865976%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

title

Methods for obtaining and analyzing whole chloroplast genome sequences (English)

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11 January 2020

8

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11 January 2020

Rhiannon Peery

9

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11 January 2020

4

Claude W dePamphilis

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11 January 2020

author name string

Robert K Jansen

1

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11 January 2020

Linda A Raubeson

2

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11 January 2020

Jeffrey L Boore

3

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11 January 2020

Timothy W Chumley

5

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11 January 2020

Rosemarie C Haberle

6

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11 January 2020

Stacia K Wyman

7

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11 January 2020

Sallie J Herman

10

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11 January 2020

H Matthew Fourcade

11

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11 January 2020

Jennifer V Kuehl

12

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11 January 2020

Joel R McNeal

13

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11 January 2020

James Leebens-Mack

14

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11 January 2020

Liying Cui

15

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11 January 2020

language of work or name

English

0 references

publication date

1 January 2005

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11 January 2020

published in

Methods in Enzymology

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11 January 2020

volume

395

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11 January 2020

page(s)

348-384

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Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

11 January 2020

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7 January 2021

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Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

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7 January 2021

Organization of repetitive DNAs and the genomic regions carrying ribosomal RNA, cob, and atp9 genes in the cucurbit mitochondrial genomes

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7 January 2021

Sense from nonsense: how the genetic information of chloroplasts is altered by RNA editing

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7 January 2021

Preparation of chloroplast DNA from pea plastids isolated in a medium of high ionic strength.

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7 January 2021

Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes.

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7 January 2021

Phylogenetic relationships in theCampanulales based onrbcL sequences

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7 January 2021

The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families

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7 January 2021

Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes

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7 January 2021

Comprehensive human genome amplification using multiple displacement amplification

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7 January 2021

Chloroplast DNA inversions and the origin of the grass family (Poaceae)

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7 January 2021

PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences.

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7 January 2021

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

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7 January 2021

Two copies of a DNA element, 'Wendy', in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters

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7 January 2021

Consed: a graphical tool for sequence finishing

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7 January 2021

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

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7 January 2021

The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

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7 January 2021

Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

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7 January 2021

A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene.

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7 January 2021

The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology to att-lambda

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7 January 2021

A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae)

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7 January 2021

Chloroplast DNA Evidence on the Origin and Radiation of the Giant Lobelias in Eastern Africa

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7 January 2021

Inverted repeats in chloroplast DNA from higher plants

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7 January 2021

The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants

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7 January 2021

Overexpression of the clpP 5'-untranslated region in a chimeric context causes a mutant phenotype, suggesting competition for a clpP-specific RNA maturation factor in tobacco chloroplasts

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7 January 2021

REPuter: the manifold applications of repeat analysis on a genomic scale

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7 January 2021

REPuter: fast computation of maximal repeats in complete genomes.

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7 January 2021

Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution.

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7 January 2021

Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad

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7 January 2021

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

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7 January 2021

The Root of Angiosperm Phylogeny Inferred from Duplicate Phytochrome Genes

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7 January 2021

Whole chloroplast genome comparison of rice, maize, and wheat: implications for chloroplast gene diversification and phylogeny of cereals

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7 January 2021

The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats

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7 January 2021

Transcript analysis of the tobacco plastid operon rps2/atpI/H/F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of the atpI coding sequence

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7 January 2021

Codon usage in plastid genes is correlated with context, position within the gene, and amino acid content.

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7 January 2021

Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA

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7 January 2021

Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families

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7 January 2021

Multigene analyses identify the three earliest lineages of extant flowering plants.

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7 January 2021

The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae

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7 January 2021

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

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7 January 2021

Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants.

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7 January 2021

Comparative analysis of chloroplast genomes: functional annotation, genome-based phylogeny, and deduced evolutionary patterns.

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7 January 2021

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

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7 January 2021

Proliferation of direct repeats near the Oenothera chloroplast DNA origin of replication.

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7 January 2021

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

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7 January 2021

The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications

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7 January 2021

Amborella not a "basal angiosperm"? Not so fast

1 reference

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7 January 2021

Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

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7 January 2021

The chloroplast genome

1 reference

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7 January 2021

History of chloroplast genomics

1 reference

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7 January 2021

The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995020-9

7 January 2021

Deletions/insertions, short inverted repeats, sequences resembling att-lambda, and frame shift mutated open reading frames are involved in chloroplast DNA differences in the genus Oenothera subsection Munzia

1 reference

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7 January 2021

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

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7 January 2021

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

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https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995020-9

7 January 2021

Automatic annotation of organellar genomes with DOGMA

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7 January 2021

Gene transfer to the nucleus and the evolution of chloroplasts.

1 reference

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7 January 2021

10.1016/S0076-6879(05)95020-9

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15865976%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

1 reference