(Q48355541)

English

3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm.

scientific article published on 7 March 2008

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18326508%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18326508%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Michael Sternberg

2

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3 January 2020

author name string

Victor I Lesk

1

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3 January 2020

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publication date

7 March 2008

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3 January 2020

number of pages

8

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24

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3 January 2020

1137-1144

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3 January 2020

9

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3 January 2020

Accounting for loop flexibility during protein-protein docking.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

ZDOCK: an initial-stage protein-docking algorithm.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

ClusPro: an automated docking and discrimination method for the prediction of protein complexes.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Solvent-accessible surfaces of proteins and nucleic acids

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Bayesian statistical analysis of protein side-chain rotamer preferences

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Modelling protein docking using shape complementarity, electrostatics and biochemical information

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

DOCKGROUND system of databases for protein recognition studies: unbound structures for docking

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Rapid refinement of protein interfaces incorporating solvation: application to the docking problem

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Assessing predictions of protein-protein interaction: the CAPRI experiment

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Optimal clustering for detecting near-native conformations in protein docking

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Docking and scoring protein complexes: CAPRI 3rd Edition

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

The atomic structure of protein-protein recognition sites

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Assessment of blind predictions of protein-protein interactions: current status of docking methods.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Protein-Protein Docking Benchmark 2.0: an update

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

ZRANK: reranking protein docking predictions with an optimized energy function.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

A method for biomolecular structural recognition and docking allowing conformational flexibility

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Geometry-based flexible and symmetric protein docking.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

PatchDock and SymmDock: servers for rigid and symmetric docking

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

GRAMM-X public web server for protein-protein docking

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

A new approach to the rapid determination of protein side chain conformations

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Flexible structural comparison allowing hinge-bending, swiveling motions

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Protein-protein docking with backbone flexibility.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Computer analysis of protein-protein interaction

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Determination of atomic desolvation energies from the structures of crystallized proteins.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN093

21 January 2018

Identifiers

10.1093/BIOINFORMATICS/BTN093

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18326508%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

DBLP publication ID

journals/bioinformatics/LeskS08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18326508%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

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