(Q51909932)

17 April 2018

title

Automatic genome-wide reconstruction of phylogenetic gene trees. (English)

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17 April 2018

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3

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Aviv Regev

series ordinal

4

object named as

Aviv Regev

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17 April 2018

Ilan Wapinski

1

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17 April 2018

Avi Pfeffer

series ordinal

2

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17 April 2018

language of work or name

English

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publication date

1 July 2007

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17 April 2018

published in

Bioinformatics

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volume

23

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page(s)

i549-58

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issue

13

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17 April 2018

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

The gain and loss of genes during 600 million years of vertebrate evolution

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Genome evolution in yeasts

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

A hybrid micro-macroevolutionary approach to gene tree reconstruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Distinguishing Homologous from Analogous Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

The rapid generation of mutation data matrices from protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Sequencing and comparison of yeast species to identify genes and regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

The closest BLAST hit is often not the nearest neighbor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

TreeFam: a curated database of phylogenetic trees of animal gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

The altered evolutionary trajectories of gene duplicates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Improved tools for biological sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

A genomic perspective on protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

Detecting putative orthologs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

A simple algorithm to infer gene duplication and speciation events on a gene tree.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM193

10.1093/BIOINFORMATICS/BTM193

21 January 2018

Identifiers

DOI

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17 April 2018

DBLP publication ID

conf/ismb/WapinskiPFR07

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DBLP Dataset 2021-01-02

28 January 2021

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17 April 2018