(Q52570979)

3 May 2018

title

Ultraviolet cross-linking assay to measure sequence-specific DNA binding in vivo. (English)

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3 May 2018

author name string

Biggin MD

series ordinal

1

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3 May 2018

language of work or name

English

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publication date

1 January 1999

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3 May 2018

published in

Methods in Enzymology

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3 May 2018

volume

304

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3 May 2018

page(s)

496-515

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3 May 2018

Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR.

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Molecular interactions within the ecdysone regulatory hierarchy: DNA binding properties of the Drosophila ecdysone-inducible E74A protein

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HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites

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RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells

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Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

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Spreading of transcriptional repressor SIR3 from telomeric heterochromatin

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Co-localization of Polycomb protein and GAGA factor on regulatory elements responsible for the maintenance of homeotic gene expression

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Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos.

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Budding yeast centromere composition and assembly as revealed by in vivo cross-linking

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Topoisomerase I interacts with transcribed regions in Drosophila cells.

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Distribution of GAGA protein on Drosophila genes in vivo.

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Promoter melting and TFIID complexes on Drosophila genes in vivo

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Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation

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13 Laser cross-linking of protein-nucleic acid complexes

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25 Identification of amino acid residues at interface of protein—Nucleic acid complexes by photochemical cross-linking

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Identification of an amino acid-base contact in the GCN4-DNA complex by bromouracil-mediated photocrosslinking

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Measurement of in vivo DNA binding by sequence-specific transcription factors using UV cross-linking.

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Myc versus USF: discrimination at the cad gene is determined by core promoter elements

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The general affinity of lac repressor for E. coli DNA: Implications for gene regulation in procaryotes and eucaryotes

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Comparison of protein binding to DNA in vivo and in vitro: defining an effective intracellular target.

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Identifiers

DOI

1 reference

3 May 2018

PubMed ID

10372378

1 reference

3 May 2018