(Q54551159)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Identification of key residues for protein conformational transition using elastic network model (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

author name string

Ji Guo Su

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Chun Hua Li

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Wei Zu Chen

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Cun Xin Wang

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

language of work or name

English

0 references

publication date

1 November 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

Journal of Chemical Physics

16 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

volume

135

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

page(s)

174101

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

issue

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

Allosteric proteins and cellular control systems

16 January 2020

cites work

1 reference

ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

21 January 2018

1 reference

Dynamic personalities of proteins

21 January 2018

1 reference

Enzyme dynamics point to stepwise conformational selection in catalysis.

21 January 2018

1 reference

Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins

21 January 2018

1 reference

Molecular dynamics and protein function

21 January 2018

1 reference

Computation of conformational transitions in proteins by virtual atom molecular mechanics as validated in application to adenylate kinase

21 January 2018

1 reference

Large conformational changes in proteins: signaling and other functions

21 January 2018

1 reference

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

21 January 2018

1 reference

A family of evolution-entropy hybrid methods for ranking protein residues by importance.

21 January 2018

1 reference

Predicting functionally important residues from sequence conservation.

21 January 2018

1 reference

Predicting allosteric communication in myosin via a pathway of conserved residues

21 January 2018

1 reference

Evolutionarily conserved pathways of energetic connectivity in protein families

21 January 2018

1 reference

Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis

21 January 2018

1 reference

Structural determinants of allosteric ligand activation in RXR heterodimers.

21 January 2018

1 reference

Surface sites for engineering allosteric control in proteins

21 January 2018

1 reference

Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES.

21 January 2018

1 reference

Residues crucial for maintaining short paths in network communication mediate signaling in proteins

21 January 2018

1 reference

Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion.

21 January 2018

1 reference

Energy landscapes associated with macromolecular conformational changes from endpoint structures

21 January 2018

1 reference

Global dynamics of proteins: bridging between structure and function

21 January 2018

1 reference

How well can we understand large-scale protein motions using normal modes of elastic network models?

21 January 2018

1 reference

Cooperative transition between open and closed conformations in potassium channels

21 January 2018

1 reference

Analysis of domain movements in glutamine-binding protein with simple models

21 January 2018

1 reference

HingeProt: automated prediction of hinges in protein structures

21 January 2018

1 reference

HingeMaster: normal mode hinge prediction approach and integration of complementary predictors.

21 January 2018

1 reference

Automatic domain decomposition of proteins by a Gaussian Network Model.

21 January 2018

1 reference

Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes

21 January 2018

1 reference

Metal-binding sites are designed to achieve optimal mechanical and signaling properties

21 January 2018

1 reference

Manipulation of conformational change in proteins by single-residue perturbations

21 January 2018

1 reference

Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein

21 January 2018

1 reference

Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding.

21 January 2018

1 reference

Predicting important residues and interaction pathways in proteins using Gaussian Network Model: binding and stability of HLA proteins

21 January 2018

1 reference

Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations

21 January 2018

1 reference

Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.

21 January 2018

1 reference

Toward the mechanism of dynamical couplings and translocation in hepatitis C virus NS3 helicase using elastic network model

21 January 2018

1 reference

Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model

21 January 2018

1 reference

Quantifying allosteric effects in proteins.

21 January 2018

1 reference

Fast dynamics perturbation analysis for prediction of protein functional sites

21 January 2018

1 reference

The Hsp70 and Hsp60 chaperone machines

21 January 2018

1 reference

Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

21 January 2018

1 reference

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

21 January 2018

1 reference

Three-dimensional structure of the ATPase fragment of a 70K heat-shock cognate protein

21 January 2018

1 reference

Structure of the Hsp110:Hsc70 nucleotide exchange machine

21 January 2018

1 reference

ATP-induced conformational changes in Hsp70: molecular dynamics and experimental validation of an in silico predicted conformation.

21 January 2018

1 reference

Tuning of chaperone activity of Hsp70 proteins by modulation of nucleotide exchange.

21 January 2018

1 reference

Role of Hsp70 ATPase domain intrinsic dynamics and sequence evolution in enabling its functional interactions with NEFs

21 January 2018

1 reference

Mapping the role of active site residues for transducing an ATP-induced conformational change in the bovine 70-kDa heat shock cognate protein

21 January 2018

1 reference

Allosteric regulation of Hsp70 chaperones by a proline switch.

21 January 2018

1 reference

Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity

21 January 2018

1 reference

Structure-function analysis of the mammalian DNA polymerase beta active site: role of aspartic acid 256, arginine 254, and arginine 258 in nucleotidyl transfer

21 January 2018

1 reference

Characterization of the active site of DNA polymerase β by molecular dynamics and quantum chemical calculation

21 January 2018

1 reference

21 January 2018

1 reference

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.

21 January 2018

1 reference

Identification of core amino acids stabilizing rhodopsin

21 January 2018

1 reference

Gaussian Dynamics of Folded Proteins

21 January 2018

1 reference

Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability

21 January 2018

1 reference

Harmonicity in slow protein dynamics

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.3651480

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22070286%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference