(Q55502476)

13 July 2018

title

Biomarker Identification from RNA-Seq Data using a Robust Statistical Approach. (English)

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13 July 2018

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2

Munirul Alam

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13 July 2018

author name string

Zobaer Akond

series ordinal

1

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13 July 2018

Md Nurul Haque Mollah

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3

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13 July 2018

publication date

30 April 2018

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13 July 2018

published in

Bioinformation

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13 July 2018

volume

14

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13 July 2018

issue

4

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13 July 2018

page(s)

153-163

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13 July 2018

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Fold change rank ordering statistics: a new method for detecting differentially expressed genes.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Dispersion estimation and its effect on test performance in RNA-seq data analysis: a simulation-based comparison of methods

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

A comparison of methods for differential expression analysis of RNA-seq data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

From RNA-seq reads to differential expression results

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Alternative isoform regulation in human tissue transcriptomes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Diminished production of monocyte proinflammatory cytokines during human immunodeficiency virus viremia is mediated by type I interferons

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Cytoscape: a software environment for integrated models of biomolecular interaction networks

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

Robust extraction of local structures by the minimum beta-divergence method

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6016759

12 August 2018

Identifiers

DOI

10.6026/97320630014153

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13 July 2018

PMC publication ID

6016759

1 reference

13 July 2018

PubMed publication ID

29983485

1 reference

13 July 2018