(Q57143674)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

title

Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

0 references

0 references

1 reference

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Richard Scheltema

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Albert J.R. Heck

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

author name string

Domenico Fasci

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

language of work or name

English

0 references

publication date

18 July 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

Molecular & Cellular Proteomics

12 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

page(s)

2018-2033

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

12 April 2020

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

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2 November 2018

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2 November 2018

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2 November 2018

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2 November 2018

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2 November 2018

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A human interactome in three quantitative dimensions organized by stoichiometries and abundances

2 November 2018

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2 November 2018

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2 November 2018

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Structural Mechanisms of Nucleosome Recognition by Linker Histones.

2 November 2018

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2 November 2018

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DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes

2 November 2018

1 reference

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The Phyre2 web portal for protein modeling, prediction and analysis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming

2 November 2018

1 reference

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Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry

2 November 2018

1 reference

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Architecture of the RNA polymerase II-Mediator core initiation complex

2 November 2018

1 reference

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Histone exchange, chromatin structure and the regulation of transcription

2 November 2018

1 reference

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xiNET: cross-link network maps with residue resolution

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Structural model of a CRISPR RNA-silencing complex reveals the RNA-target cleavage activity in Cmr4

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells.

2 November 2018

1 reference

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A "proteomic ruler" for protein copy number and concentration estimation without spike-in standards.

2 November 2018

1 reference

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Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

2 November 2018

1 reference

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Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.

2 November 2018

1 reference

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Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units

2 November 2018

1 reference

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

2 November 2018

1 reference

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Combinatorial approach for large-scale identification of linked peptides from tandem mass spectrometry spectra

2 November 2018

1 reference

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Incorporating DNA shearing in standard affinity purification allows simultaneous identification of both soluble and chromatin-bound interaction partners

2 November 2018

1 reference

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Integrated structural analysis of the human nuclear pore complex scaffold

2 November 2018

1 reference

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The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

2 November 2018

1 reference

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Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Protein interactions, post-translational modifications and topologies in human cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Identification of cross-linked peptides from complex samples.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Flexible-meccano: a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

The HMGN family of chromatin-binding proteins: dynamic modulators of epigenetic processes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 A Resolution

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Structure of RCC1 chromatin factor bound to the nucleosome core particle

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Cleavable cross-linker for protein structure analysis: reliable identification of cross-linking products by tandem MS.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

CORUM: the comprehensive resource of mammalian protein complexes--2009

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

The biology of chromatin remodeling complexes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Identification of cross-linked peptides from large sequence databases

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

I-TASSER server for protein 3D structure prediction

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

The molecular sociology of the cell

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Chromatin modifications and their function

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Proteome survey reveals modularity of the yeast cell machinery

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

An overview of the basic helix-loop-helix proteins

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Cytoscape: a software environment for integrated models of biomolecular interaction networks

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Competition between histone H1 and HMGN proteins for chromatin binding sites.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Ran binds to chromatin by two distinct mechanisms.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Translating the Histone Code

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

The cell as a collection of protein machines: preparing the next generation of molecular biologists

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Crystal structure of the nucleosome core particle at 2.8 A resolution

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Structure and function of the b/HLH/Z domain of USF

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Heterogeneous nuclear ribonucleoprotein K is a DNA-binding transactivator

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Characterization and primary structure of the poly(C)-binding heterogeneous nuclear ribonucleoprotein complex K protein

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6166682

Distinct domains in high mobility group N variants modulate specific chromatin modifications

2 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30021884

12 December 2020

inferred from PubMed ID database lookup

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30021884

12 December 2020

inferred from PubMed ID database lookup

Implementation of Ultraviolet Photodissociation on a Benchtop Q Exactive Mass Spectrometer and Its Application to Phosphoproteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30021884

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1074/MCP.RA118.000924

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30021884%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

1 reference