(Q58064235)

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Differential Molecular Responses of Rice and Wheat Coleoptiles to Anoxia Reveal Novel Metabolic Adaptations in Amino Acid Metabolism for Tissue Tolerance

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21622811%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance (English)

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2 February 2020

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2 February 2020

Nicolas L Taylor

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2 February 2020

A. Harvey Millar

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2 February 2020

Rachel N Shingaki-Wells

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Rachel N Shingaki-Wells

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2 February 2020

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Adam J Carroll

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2 February 2020

Wenxu Zhou

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2 February 2020

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27 May 2011

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2 February 2020

number of pages

19

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Plant Physiology

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2 February 2020

156

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2 February 2020

1706-1724

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2 February 2020

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2 February 2020

copyright license

Creative Commons Attribution 4.0 International

25 January 2021

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0 references

Sequence and characterization of 6 Lea proteins and their genes from cotton.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia.

1 reference

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30 November 2018

The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice

1 reference

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30 November 2018

The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Neuroprotective effect of L-serine against temporary cerebral ischemia in rats.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Glycolysis and the tricarboxylic acid cycle are linked by alanine aminotransferase during hypoxia induced by waterlogging of Lotus japonicus

1 reference

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30 November 2018

Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings.

1 reference

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30 November 2018

Comparative analysis of anoxic coleoptile elongation in rice varieties: relationship between coleoptile length and carbohydrate levels, fermentative metabolism and anaerobic gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

The metabolome of Chlamydomonas reinhardtii following induction of anaerobic H2 production by sulfur depletion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Protection of C. elegans from anoxia by HYL-2 ceramide synthase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Cell biology. Ceramides--friend or foe in hypoxia?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Differences between rice and wheat in temperature responses of photosynthesis and plant growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Flooding stress: acclimations and genetic diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Free-flow electrophoresis for purification of plant mitochondria by surface charge.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Oxygen Initiation of Respiration and Mitochondrial Biogenesis in Rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Response to Anoxia in Rice and Wheat Seedlings: Changes in the pH of Intracellular Compartments, Glucose-6-Phosphate Level, and Metabolic Rate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Anaerobic stress induces the transcription and translation of sucrose synthase in rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Differences in the Anaerobic Lactate-Succinate Production and in the Changes of Cell Sap pH for Plants with High and Low Resistance to Anoxia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Effects of o(2) concentration on rice seedlings.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Effect of anoxia on energy charge and protein synthesis in rice embryo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

GROWTH, AUXIN, AND TROPISMS IN DECAPITATED AVENA COLEOPTILES.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Two different late embryogenesis abundant proteins from Arabidopsis thaliana contain specific domains that inhibit Escherichia coli growth.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Sensing and signalling in response to oxygen deprivation in plants and other organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Protein synthesis by rice coleoptiles during prolonged anoxia: implications for glycolysis, growth and energy utilization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Differential impact of environmental stresses on the pea mitochondrial proteome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Changes in the mitochondrial proteome during the anoxia to air transition in rice focus around cytochrome-containing respiratory complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Studies on yeast metabolism. I. Fractionation and microdetermination of cell carbohydrates

1 reference

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30 November 2018

Anoxia tolerance in rice seedlings: exogenous glucose improves growth of an anoxia-'intolerant', but not of a 'tolerant' genotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Phloem metabolism and function have to cope with low internal oxygen.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Antioxidants, oxidative damage and oxygen deprivation stress: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Expression profile analysis of the low-oxygen response in Arabidopsis root cultures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Protection by glycine against hypoxic injury of rat hepatocytes: inhibition of ion fluxes through nonspecific leaks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Selective translation of cytoplasmic mRNAs in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

Glycine protection against hypoxic injury in isolated rat proximal tubules: the role of proteases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149938

30 November 2018

ATP Production by Respiration and Fermentation, and Energy Charge during Aerobiosis and Anaerobiosis in Twelve Fatty and Starchy Germinating Seeds

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alanine aminotransferase catalyses the breakdown of alanine after hypoxia in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protection from hypoxic injury in cultured hepatocytes by glycine, alanine, and serine

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glycine protects against hepatocyte killing by KCN or hypoxia by preventing intracellular Na+ overload in the rat

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stereospecificity and electrogenicity of amino acid transport in Riccia fluitans

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationships between intracellular amino acid levels and protection against injury to isolated proximal tubules

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of Anoxia on Carbohydrate Metabolism in Rice Seedlings

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of anoxia on starch breakdown in rice and wheat seeds

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Anaerobic induction of alanine aminotransferase in barley root tissue

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Abscisic acid-dependent and -independent expression of the carrot late-embryogenesis-abundant-class gene Dc3 in transgenic tobacco seedlings

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Anoxic stress leads to hydrogen peroxide formation in plant cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Re-Aeration following Hypoxia or Anoxia Leads to Activation of the Antioxidative Defense System in Roots of Wheat Seedlings

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of anaerobiosis on respiratory rate, cytochrome oxidase activity and mitochondrial structures in coleoptiles of rice (Oryza sativa L.).

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcript profiling of the anoxic rice coleoptile

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A complex containing both trypsin inhibitor and dehydroascorbate reductase activities isolated from mitochondria of etiolated mung bean (Vigna radiata L. (Wilczek) cv. Tainan no. 5) seedlings

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of alcoholic fermentation in coleoptiles of two rice cultivars differing in tolerance to anoxia

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622811

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1104/PP.111.175570

1 reference

Europe PubMed Central

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2 February 2020

0 references

1 reference

Europe PubMed Central

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2 February 2020

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