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Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism

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title

Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism (English)

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main subject

metabolomics

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Caenorhabditis elegans

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4-hydroxybenzoic acid

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(9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid

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N-phenylacetylglycine

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1,5-anhydro-D-glucitol

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D-mannitol 1-phosphate

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D-ribofuranose 5-phosphate

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inferred from

reverse claim

(2S,6R)-10-formyltetrahydrofolic acid

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inferred from

reverse claim

3-(beta-D-ribofuranosyl)uric acid

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(4R)-4-{[3,6-dideoxy-4-O-(1H-indol-3-ylcarbonyl)-alpha-L-arabino-hexopyranosyl]oxy}valeric acid

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beta- D- sedoheptulopyranose

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7,8-dihydro-8-oxoguanine

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inferred from

reverse claim

1D-myo-inositol 1,2-cyclic phosphate

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inferred from

reverse claim

nicotinic acid D-ribonucleotide

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9E-Heptadecenoic acid

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1 reference

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S-adenosyl-L-homocysteine

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1 reference

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(S,S)-2,6-diaminopimelic acid

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inferred from

reverse claim

4-guanidinobutyric acid

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(2S)-2-azaniumyl-4-oxobutanoate

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inferred from

reverse claim

(2S)-2-amino-4-oxobutanoic acid

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phosphorylethanolamine

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N,N-dimethylglycine zwitterion

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deoxyadenosine 5'-monophosphate

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adenosine monophosphate

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uridine diphosphate glucose

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inferred from

reverse claim

N-acetyl-L-phenylalanine

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(4RS)-4-hydroxy-L-proline

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inferred from

reverse claim

1,2-dihydroxy-5-(methylthio)pent-1-en-3-one

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inferred from

reverse claim

beta-L-fucose 1-phosphate

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inferred from

reverse claim

thiomorpholine-3-carboxylic acid

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inferred from

reverse claim

(R)-2-hydroxy-2-methylbutyronitrile

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inferred from

reverse claim

(R)-3-hydroxybutyric acid

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D-glucosamine 6-phosphate

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inferred from

reverse claim

2-aminopteridine-4,7-diol

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inferred from

reverse claim

beta-D-glucose 6-phosphate

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1 reference

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2-phospho-D-glyceric acid

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inferred from

reverse claim

(3R)-3-hydroxy-3-methyl-5-(phosphonooxy)pentanoic acid

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1 reference

sn-glycero-3-phosphocholine

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inferred from

reverse claim

uridine 5'-triphosphoric acid

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inferred from

reverse claim

(RS)-3-phosphoglyceric acid

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inferred from

reverse claim

(2S)-2-hydroxy-2-propan-2-ylbutanedioic acid

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inferred from

reverse claim

(2S)-2,3,4,5-Tetrahydropyridine-2-carboxylic acid

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1 reference

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1 reference

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2-amino-3-hydroxybenzoic acid

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inferred from

reverse claim

cytidine triphosphate

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inferred from

reverse claim

isopentenyl pyrophosphate

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1 reference

1 reference

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guanosine 5'-diphosphate (RRSR form)

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(E)-2,3-dimethylacrylic acid

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1 reference

1 reference

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1 reference

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α-aminoisobutyric acid

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1 reference

1 reference

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1 reference

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(R)-glyceryl 1-phosphate

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inferred from

reverse claim

1-O-palmitoyl-sn-glycero-3-phosphocholine

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inferred from

reverse claim

(S)-2-hydroxyglutaric acid

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inferred from

reverse claim

(2S)-hydroxy(4-hydroxyphenyl)ethanenitrile

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1 reference

DL-p-hydroxyphenyl lactic acid

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inferred from

reverse claim

1-(sn-glycero-3-phospho)-1D-myo-inositol

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methionine sulfoximine

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inferred from

reverse claim

2,3,4-trihydroxybutanoic acid

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(S)-3-hydroxyisobutyric acid

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N(2)-acetyl-L-ornithine

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guanosine monophosphate

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1 reference

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1 reference

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all-cis-docosa-7,10,13,16-tetraenoic acid

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1 reference

1 reference

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flavin adenine dinucleotide

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1 reference

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N-acetyl-L-aspartic acid

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1 reference

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3-hydroxybenzoic acid

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inferred from

reverse claim

N(6)-(1,2-dicarboxyethyl)-AMP

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inferred from

reverse claim

5-guanidino-2-oxopentanoic acid

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1 reference

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1 reference

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6-phospho-D-gluconic acid

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UDP N-acetyl-alpha-D-glucosamine

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[5-(2,4-Dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

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dihydroxyacetone phosphate

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4-trimethylammoniobutanoate

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inferred from

reverse claim

1-aminocyclopropanecarboxylic acid

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2-Aminopropanedioic Acid

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inferred from

reverse claim

(R)-pyroglutamic acid

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inferred from

reverse claim

2-deoxy-alpha-D-ribose 1-phosphate

1 reference

1 reference

1 reference

4-hydroxy-2-oxoglutaric acid

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1 reference

1 reference

3-O-beta-D-galactosyl-sn-glycerol

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inferred from

reverse claim

O-propanoylcarnitine (internal charge)

1 reference

1 reference

D-galactono-1,4-lactone

1 reference

1 reference

1 reference

1 reference

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alpha,alpha-trehalose

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

nicotinamide ribotide

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

indole-3-pyruvic acid

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

3-aminoisobutyric acid

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1 reference

1 reference

taurodeoxycholic acid

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inferred from

reverse claim

5-hydroxyindole-3-acetic acid

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1 reference

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1 reference

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2-hydroxybenzenepropanoic acid

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inferred from

reverse claim

sedoheptulose 7-phosphate

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1 reference

1 reference

1 reference

1 reference

1 reference

(4S,5S)-5'-methylthioadenosine

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inferred from

reverse claim

2-methylpropanoic acid

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inferred from

reverse claim

dihomo-γ-linolenic acid

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inferred from

reverse claim

S(6)-acetyldihydrolipoamide

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1 reference

1 reference

1 reference

1 reference

N(2)-phenylacetylglutamine

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inferred from

reverse claim

L-α-aminobutyric acid

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inferred from

reverse claim

7-deaza-7-aminomethyl-guanine

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inferred from

reverse claim

7-aminomethyl-7-deazaguanine

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1 reference

N(pros)-methyl-L-histidine

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inferred from

reverse claim

indole-3-carboxaldehyde

1 reference

inferred from

reverse claim

(S)-2-acetyl-2-hydroxybutanoic acid

1 reference

1 reference

1 reference

alpha-ketoglutaric acid

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1 reference

N-acetylglutamic acid

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1 reference

flavin mononucleotide

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

α-ketoisocaproic acid

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1 reference

guanosine cyclic 3',5'-phosphate

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1 reference

adenosine cyclic phosphate

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inferred from

reverse claim

glycodeoxycholic acid

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inferred from

reverse claim

4'-phosphopantetheine

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inferred from

reverse claim

4-(trimethylammonio)butanoic acid

1 reference

inferred from

reverse claim

3-hydroxypropionic acid

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inferred from

reverse claim

formiminoglutamic acid

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inferred from

reverse claim

DL-N-carbamoylaspartic acid

1 reference

1 reference

1 reference

(1-Ribosylimidazole)-4-acetate

1 reference

1 reference

1 reference

1 reference

alpha-D-glucose-6-phosphate

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inferred from

reverse claim

2-pyridone-5-carboxylic acid

1 reference

inferred from

reverse claim

N-carbamoylputrescine

1 reference

1 reference

N-acetyl-D-galactosamine

1 reference

1 reference

1 reference

N-Acetyl-D-Glucosamine

1 reference

inferred from

reverse claim

CDP-choline (neutral charge)

1 reference

inferred from

reverse claim

(2E,4Z)-2-aminohexa-2,4-dienedioic acid

1 reference

1 reference

1 reference

1 reference

1 reference

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phosphoenolpyruvic acid

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

N-methyl-2-pyrrolidone

1 reference

1 reference

adenosine triphosphate

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

adenosine diphosphate

1 reference

inferred from

reverse claim

4-hydroxyphenylacetic acid

1 reference

inferred from

reverse claim

uridine 5'-diphosphate

1 reference

1 reference

1 reference

alpha,alpha-trehalose 6-phosphate

1 reference

inferred from

reverse claim

(S)-α-glycerophosphorylethanolamine

1 reference

1 reference

1 reference

N-4-hydroxyphenylacetylglutamic acid

1 reference

1 reference

1 reference

1 reference

1 reference

3-ethyl-3-methylpyruvic acid

1 reference

1 reference

1 reference

diethyl hydrogen phosphate

1 reference

1 reference

1 reference

1 reference

1 reference

all-cis-icosa-11,14,17-trienoic acid

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inferred from

reverse claim

5-hydroxyisouric acid

1 reference

1 reference

1 reference

1 reference

pyrrole-2-carboxylic acid

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inferred from

reverse claim

1-palmitoyl-2-linoleoyl-3-oleoyl-sn-glycerol

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

4-hydroxybutyric acid

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

guanosine triphosphate

1 reference

1 reference

1 reference

2-phosphoglycolic acid

1 reference

inferred from

reverse claim

3-methyl-2-oxobutyric acid

1 reference

1 reference

1 reference

1 reference