(Q64099270)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30864654%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

title

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2 (English)

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28 April 2020

1

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28 April 2020

Steve S Ho

2

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28 April 2020

Alexej Abyzov

17

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28 April 2020

18

Alexander E Urban

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28 April 2020

8

Joseph G Arthur

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28 April 2020

6

Xianglong Zhang

1 reference

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28 April 2020

10

Reenal Pattni

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28 April 2020

12

Yiling Huang

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28 April 2020

3

Stephanie U Greer

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28 April 2020

author name string

Noah Spies

4

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28 April 2020

John M Bell

5

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28 April 2020

Xiaowei Zhu

7

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28 April 2020

Seunggyu Byeon

9

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28 April 2020

Ishan Saha

11

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28 April 2020

Giltae Song

13

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28 April 2020

Dimitri Perrin

14

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28 April 2020

Wing H Wong

15

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28 April 2020

Hanlee P Ji

16

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28 April 2020

language of work or name

English

0 references

publication date

1 May 2019

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28 April 2020

published in

Nucleic Acids Research

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28 April 2020

volume

47

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28 April 2020

page(s)

3846-3861

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28 April 2020

issue

8

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Creative Commons Attribution-NonCommercial 4.0 International

28 April 2020

copyright license

start time

13 March 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Controlled synthesis of HBsAg in a differentiated human liver carcinoma-derived cell line

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12 December 2020

Chromosomes of human hepatoma cell lines

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12 December 2020

Cytogenetic studies on human liver cancer cell lines

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12 December 2020

A comprehensive karyotypic study on human hepatocellular carcinoma by spectral karyotyping.

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12 December 2020

dbSNP: the NCBI database of genetic variation

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12 December 2020

The human genome browser at UCSC

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12 December 2020

Statistical significance for genomewide studies

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12 December 2020

Silencing of the novel p53 target gene Snk/Plk2 leads to mitotic catastrophe in paclitaxel (taxol)-exposed cells

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12 December 2020

The UCSC Table Browser data retrieval tool

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12 December 2020

Tbx Genes Specify Posterior Digit Identity through Shh and BMP Signaling.

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12 December 2020

A census of human cancer genes

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12 December 2020

Tbx2 is essential for patterning the atrioventricular canal and for morphogenesis of the outflow tract during heart development

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12 December 2020

Tbx2 is overexpressed and plays an important role in maintaining proliferation and suppression of senescence in melanomas

1 reference

12 December 2020

Cytotoxic effects of 100 reference compounds on Hep G2 and HeLa cells and of 60 compounds on ECC-1 and CHO cells. I mechanistic assays on ROS, glutathione depletion and calcein uptake

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12 December 2020

Transcriptional silencing of Polo-like kinase 2 (SNK/PLK2) is a frequent event in B-cell malignancies.

1 reference

12 December 2020

Cell cycle regulation of the T-box transcription factor tbx2.

1 reference

12 December 2020

Regional morphogenesis in the hypothalamus: a BMP-Tbx2 pathway coordinates fate and proliferation through Shh downregulation.

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12 December 2020

Caprin-2 enhances canonical Wnt signaling through regulating LRP5/6 phosphorylation

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12 December 2020

Histologic subtypes of hepatoblastoma are characterized by differential canonical Wnt and Notch pathway activation in DLK+ precursors.

1 reference

12 December 2020

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

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12 December 2020

Exploring Rak tyrosine kinase function in breast cancer.

1 reference

12 December 2020

RAKing in AKT: a tumor suppressor function for the intracellular tyrosine kinase FRK.

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12 December 2020

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

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12 December 2020

Hep G2 is a hepatoblastoma-derived cell line.

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12 December 2020

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library

1 reference

12 December 2020

BEDTools: a flexible suite of utilities for comparing genomic features

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12 December 2020

Oncogenic and tumor suppressive roles of polo-like kinases in human hepatocellular carcinoma.

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12 December 2020

Genomic instability--an evolving hallmark of cancer

1 reference

12 December 2020

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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12 December 2020

Role of Tbx2 in defining the territory of the pronephric nephron.

1 reference

12 December 2020

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

1 reference

12 December 2020

Hallmarks of Cancer: The Next Generation

1 reference

12 December 2020

Polo-like kinase Plk2 is an epigenetic determinant of chemosensitivity and clinical outcomes in ovarian cancer.

1 reference

12 December 2020

A framework for variation discovery and genotyping using next-generation DNA sequencing data

1 reference

12 December 2020

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

1 reference

12 December 2020

RAS oncogenes: weaving a tumorigenic web

1 reference

12 December 2020

ViennaRNA Package 2.0

1 reference

12 December 2020

Polo Like Kinase 2 Tumour Suppressor and cancer biomarker: new perspectives on drug sensitivity/resistance in ovarian cancer

1 reference

12 December 2020

Reduced cell proliferation by IKK2 depletion in a mouse lung-cancer model

1 reference

12 December 2020

Detecting and annotating genetic variations using the HugeSeq pipeline

1 reference

12 December 2020

Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift

1 reference

12 December 2020

Melanoma genome sequencing reveals frequent PREX2 mutations

1 reference

12 December 2020

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

1 reference

12 December 2020

Interactive toxicity of usnic acid and lipopolysaccharides in human liver HepG2 cells

1 reference

12 December 2020

The T box transcription factor TBX2 promotes epithelial-mesenchymal transition and invasion of normal and malignant breast epithelial cells

1 reference

12 December 2020

Involvement of endoplasmic reticulum and autophagy in microcystin-LR toxicity in Vero-E6 and HepG2 cell lines

1 reference

12 December 2020

Inhibition of miR-96 expression reduces cell proliferation and clonogenicity of HepG2 hepatoma cells.

1 reference

12 December 2020

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

1 reference

12 December 2020

RetroSeq: transposable element discovery from next-generation sequencing data

1 reference

12 December 2020

An insight into the hepatocellular death induced by amphetamines, individually and in combination: the involvement of necrosis and apoptosis

1 reference

12 December 2020

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

1 reference

12 December 2020

Genome engineering using the CRISPR-Cas9 system

1 reference

12 December 2020

Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma.

1 reference

12 December 2020

Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA

1 reference

12 December 2020

TBX2 represses CST6 resulting in uncontrolled legumain activity to sustain breast cancer proliferation: a novel cancer-selective target pathway with therapeutic opportunities

1 reference

12 December 2020

MicroRNA regulation of DNA repair gene expression in 4-aminobiphenyl-treated HepG2 cells

1 reference

12 December 2020

Exome sequencing of hepatoblastoma reveals novel mutations and cancer genes in the Wnt pathway and ubiquitin ligase complex.

1 reference

12 December 2020

LUMPY: a probabilistic framework for structural variant discovery.

1 reference

12 December 2020

Shifts in dietary carbohydrate-lipid exposure regulate expression of the non-alcoholic fatty liver disease-associated gene PNPLA3/adiponutrin in mouse liver and HepG2 human liver cells.

1 reference

12 December 2020

IκB kinase β (IKBKB) mutations in lymphomas that constitutively activate canonical nuclear factor κB (NFκB) signaling.

1 reference

12 December 2020

Metabolism of gamma hydroxybutyrate in human hepatoma HepG2 cells by the aldo-keto reductase AKR1A1.

1 reference

12 December 2020

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

1 reference

12 December 2020

From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline

1 reference

12 December 2020

Intact stable isotope labeled plasma proteins from the SILAC-labeled HepG2 secretome

1 reference

12 December 2020

Identifying causal regulatory SNPs in ChIP-seq enhancers

1 reference

12 December 2020

Cancer Immunotherapy by Targeting IDO1/TDO and Their Downstream Effectors

1 reference

12 December 2020

LKB1 Tumor Suppressor: Therapeutic Opportunities Knock when LKB1 Is Inactivated.

1 reference

12 December 2020

The utility of HepG2 cells to identify direct mitochondrial dysfunction in the absence of cell death.

1 reference

12 December 2020

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing

1 reference

12 December 2020

A global reference for human genetic variation

1 reference

12 December 2020

An integrated map of structural variation in 2,504 human genomes

1 reference

12 December 2020

ENCODE data at the ENCODE portal

1 reference

12 December 2020

T-box 2 expression predicts poor prognosis in gastric cancer

1 reference

12 December 2020

Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene.

1 reference

12 December 2020

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

1 reference

12 December 2020

Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas.

1 reference

12 December 2020

Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals

1 reference

12 December 2020

Plk2 promotes tumor growth and inhibits apoptosis by targeting Fbxw7/Cyclin E in colorectal cancer

1 reference

12 December 2020

PREX2 promotes the proliferation, invasion and migration of pancreatic cancer cells by modulating the PI3K signaling pathway

1 reference

12 December 2020

Functional Toxicogenomic Assessment of Triclosan in Human HepG2 Cells Using Genome-Wide CRISPR-Cas9 Screening

1 reference

12 December 2020

Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma

1 reference

12 December 2020

Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

1 reference

12 December 2020

Genome-wide reconstruction of complex structural variants using read clouds.

1 reference

12 December 2020

Effect of silencing the T‑Box transcription factor TBX2 in prostate cancer PC3 and LNCaP cells

1 reference

12 December 2020

TBX2 over-expression promotes nasopharyngeal cancer cell proliferation and invasion

1 reference

12 December 2020

Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy.

1 reference

12 December 2020

The emerging roles of CDK12 in tumorigenesis.

1 reference

12 December 2020

Picky comprehensively detects high-resolution structural variants in nanopore long reads

1 reference

12 December 2020

Accurate detection of complex structural variations using single-molecule sequencing

1 reference

12 December 2020

Minimap2: pairwise alignment for nucleotide sequences

1 reference

12 December 2020

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

1 reference

12 December 2020

Resolving the full spectrum of human genome variation using Linked-Reads

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKZ169

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30864654%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30864654%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

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