About edit

This page collects information about medicine-related Shape Expressions (Q29377880) (ShEx) and their use in EntitySchemas on Wikidata.

List of Shape Expressions edit

Theoretically useful edit

  • patient
  • symptom
  • physician
  • nurse
  • electronic health record
  • diagnostic technique
  • diagnosis
  • medical condition
  • disease
  • pathogen
  • treatment
  • pharmaceutical drug
  • medical procedure
  • hospital
  • clinical trial
  • patient data
  • anatomical entity
  • physiological process
  • pathological process
  • medical specialty
  • ethics committee
  • epidemic
  • health
  • public health
  • medical journal
  • medical society
  • more

Available schemas edit

General edit

Medical schemas edit

  • EntitySchema:E69 disease - basic schema for a human disease according to the disease ontology
  • EntitySchema:E72 pharmaceutical drug - basic schema of a pharmaceutical drug
  • EntitySchema:E88 health in region - basic scheme for health by region/country items
  • EntitySchema:E113 Gene Wiki disease terms - schema for items sourced from the Disease Ontology
  • EntitySchema:E137 privacy policy - this item has a privacy policy URL
  • EntitySchema:E173 outbreak - Entity schema for outbreak in specific locations
  • EntitySchema:E184 pandemic - entity schema of a pandemic
  • EntitySchema:E187 hospital - entity schema of hospital
  • EntitySchema:E188 2020 coronavirus pandemic local outbreaks - entity schema of 2020 coronavirus pandemic local outbreaks
  • EntitySchema:E189 clinical trial - Entity Schema for a clinical trial
  • EntitySchema:E195 COVID-19 contact tracing app - Entity schema of COVID-19 contact tracing app
  • EntitySchema:E196 covid-19 death - entity schema of a covid-19 related death
  • EntitySchema:E210 hospital (Malayalam) - entity schema of hospital (Malayalam)
  • EntitySchema:E211 hospital - schema for hospitals
  • EntitySchema:E323 Gene Wiki bot for the Disease Ontology - Disease Ontology on Wikidata as monitored and maintained by Gene Wiki bots
  • EntitySchema:E344 gene-disease associations - shape patterns on how gene-disease associations are modelled in Wikidata
  • EntitySchema:E351 pharmaceutical product - A therapeutical product, usually containing one or more types of compounds as active ingredients
  • EntitySchema:E396 ethics committee - schema for an ethics committee, institutional review board or institutional animal care and use committee
  • EntitySchema:E397 anatomical structure - schema for an anatomical structure

Common use cases for Shape Expressions edit

  • Standardization
  • Quality control
  • Subsetting

Issues with Entity Schemas edit

Issues with existing Entity Schemas edit

Conceptual issues edit

Multiple Entity Schemas for the same or closely related concepts edit
Dependencies of Entity Schemas edit

Practical issues edit

Findability edit
Testing edit
  • Sandboxes
Scalability edit
  • How to use one Shape Expression across a large graph?
  • How to use multiple Shape Expressions together?
    • How to standardize the declaration of dependencies?

Issues with missing Entity Schemas edit

  • Any modelling standards to follow?
  • What should go into Wikidata or elsewhere?

See also edit