User:SCIdude/Rotavirus
Rotavirus A annotation
editInterPro families
edit- Rotavirus VP1 RNA-directed RNA polymerase, C-terminal domain, protein family (Q83133549)
- Rotavirus VP2 (Q24745872)
- Protein VP3, rotavirus (Q24770641)
- Outer capsid protein VP4 (Q81490100)
- VP5*, fragment of Outer capsid protein VP4 (Q81490100) (cleaved by trypsin)
- Rotavirus A/C, major capsid protein VP6 (Q24774064)
- Rotavirus major outer capsid VP7 (Q24773176)
- VP8*, fragment of Outer capsid protein VP4 (Q81490100) (cleaved by trypsin)
- Rotavirus non-structural protein 1 (Q24724262)
- Rotavirus non-structural protein 2 (Q24719751)
- Rotavirus non-structural protein NSP3 (Q24785520)
- Rotavirus non-structural protein 4 (Q24726417)
- Rotavirus A/C, non-structural protein 5 (Q24739451)
- Rotavirus non-structural protein 6 (Q24782928)
Strains / generic groups used in experimental papers
editStrains / generic groups in WD
editRoughly sorted by usage.
- simian rhesus rotavirus (Q112242067) --- G3 P[3] I2 R2 C3 M3 A9 N? T3 E3 H6
- Simian rotavirus A/SA11 (Q112242768) --- G3 P[1/2] I2 R2 C5 M5 A5 N5/N2 T5 E2 H5
- Bovine rotavirus strain RF (Q113380949) --- G6 P[1] I2 R2 C2 M2 A3 N2 T6 E2 H3
- Bovine rotavirus strain UK (Q113433734) --- G6 P[5] I2 R2 C2 M2 A3 N2 T7 E2 H3
- Bovine rotavirus strain NCDV (Q113434050) --- G6 P[1] I2 R2 C2 M2 N2 T6 E2
- Bovine rotavirus strain WC3 (Q113451268) --- G6 P[5] I2 R2 C2 M2 A3 N2 T6 E2 H3
- Porcine rotavirus OSU (Q112246255) --- G5 P[7] I5 R1 C1 M1 A1 N1 T1 E1 H1
- Human rotavirus strain WA (Q112246336) --- G1 P[8] I1 R1 C1 M1 A1 N1 T1 E1 H1
- Simian rotavirus A/SA11-4F (Q112242692)
- Human rotavirus RV-5 (Q112252986) --- G2 P[4] N2 E2
- Porcine rotavirus strain CRW-8 (Q112262674) --- G3 P[7] I5
- human rotavirus HAL1166 (Q112242465) --- G8 P[14]
- Human rotavirus DS1 (Q112252639) --- G2 P[4] I2 R2 C2 M2 A2 N2 T2 E2 H2
- human rotavirus strain PA169 (Q112252484) --- G6 P[14] I2 R2 C2 M2 A3 N2 T6 E2 H3
- Equine rotavirus strain H-2 (Q112252427) --- G3 P[12] I2 A10 E2
- Equine rotavirus strain H-1 (Q112252150) --- G5 P[7] I5 A8 E1
- human rotavirus strain KUN (Q112703025) --- G2 P[4] E2 H2
- Porcine rotavirus strain YM (Q112252803) --- G11 P[7] I5 R1 C1 M1 A8 N1 T1 E1
- Human rotavirus KU (Q112252774) --- G1 P[8] I1 R1 C1 M1 A1 N1 T1 E1 H1
- Porcine rotavirus strain Gottfried (Q112252593) --- G4 P[6] I1 R1 C1 M1 A8 N1 T1 E1 H1
- Murine rotavirus EDIM (Q112246056) --- G16 P[16] I7 A7 E7
- Rabbit rotavirus strain Alabama (Q113380805) --- G3 P[14] A9 E5 H3
- Bovine rotavirus strain C486 (Q113381814)
- human rotavirus strain D (Q113396346) --- G1 P[8] I1 R1 C1 M1 A1 N1 T1 E1 H1
- Simian rotavirus A/SA11-5N (Q113354635) --- G3 P[1] I2 R2 C5 M5 A5 N5 T5 E2 H5
- Human rotavirus strain ST3 (Q113457173) --- G4 P[6] I1 R1 C1 M1 A1 N1 T1 E1 H1
- Human rotavirus strain MO (Q113468985) --- G3 P[8] E1
- human rotavirus K8 (Q113531324) --- G1 P[9] A1 H3
- Human rotavirus RV-3 (Q113531390) --- G3 P[6] I1 E1
- Human rotavirus WI-61 (Q113531550) --- G9 P[8] I1 R1 C1 M1 A1 N1 T1 E1 H1
- bovine rotavirus (Q112246123)
- porcine rotavirus (Q113469026)
- Avian rotavirus (Q113469397)
- human rotavirus (Q113531739)
- Murine rotavirus (Q113562395)
Query
editThe following query uses these:
- Properties: instance of (P31) , main subject (P921) , describes a project that uses (P4510)
SELECT ?ditemLabel (COUNT(?item) AS ?count) WHERE { ?item wdt:P31 wd:Q13442814. ?item wdt:P921 wd:Q164778. ?item wdt:P4510 ?ditem. SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } } GROUP BY ?ditemLabel
Papers using many strains
editThe following query uses these:
- Properties: instance of (P31) , main subject (P921) , describes a project that uses (P4510)
SELECT ?item ?itemLabel ?cnt { { SELECT ?item (COUNT(?value) AS ?cnt) { ?item wdt:P31 wd:Q13442814. ?item wdt:P921 wd:Q164778. ?item wdt:P4510 ?value } GROUP BY ?item ORDER BY DESC(?cnt) LIMIT 100 } SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } } ORDER BY DESC(?cnt)
Literature Queries
editThe following query uses these:
- Items: Rotavirus (Q164778) , pharmacology (Q128406) , structural biology (Q908902) , viral entry into host cell (Q4118894) , viral genome replication (Q3933202) , virion assembly (Q14916420) , viral RNA (Q27108123) , post-translational protein modification (Q898362) , modulation by virus of host process (Q14818042) , modulation by host of viral process (Q22244941) , RNA (Q11053) , Rotavirus VP1 RNA-directed RNA polymerase, C-terminal domain, protein family (Q83133549) , Rotavirus VP2 (Q24745872) , Protein VP3, rotavirus (Q24770641) , Outer capsid protein VP4 (Q81490100) , Rotavirus A/C, major capsid protein VP6 (Q24774064) , Rotavirus major outer capsid VP7 (Q24773176) , Rotavirus non-structural protein 1 (Q24724262) , Rotavirus non-structural protein 2 (Q24719751) , Rotavirus non-structural protein NSP3 (Q24785520) , Rotavirus non-structural protein 4 (Q24726417) , Rotavirus A/C, non-structural protein 5 (Q24739451) , Rotavirus non-structural protein 6 (Q24782928)
- Properties: cites work (P2860) , publication date (P577) , PMC publication ID (P932) , DOI (P356) , main subject (P921)
SELECT DISTINCT ?label ?item ?pmcid ?doi ?date { VALUES ?pw { wd:Q164778 } VALUES ?top { wd:Q128406 wd:Q908902 wd:Q4118894 wd:Q3933202 wd:Q14916420 wd:Q27108123 wd:Q898362 wd:Q14818042 wd:Q22244941 wd:Q11053 wd:Q83133549 wd:Q24745872 wd:Q24770641 wd:Q81490100 wd:Q24774064 wd:Q24773176 wd:Q24724262 wd:Q24719751 wd:Q24785520 wd:Q24726417 wd:Q24739451 wd:Q24782928 } ?item p:P921 [ ps:P921 ?pw]. ?item p:P921 [ ps:P921 ?top]. MINUS { ?item wdt:P2860 [] } ?item wdt:P577 ?date. OPTIONAL { ?item wdt:P932 ?pmcid. } OPTIONAL { ?item wdt:P356 ?doi. } ?item rdfs:label ?label. FILTER(lang(?label) = 'en' && !STRENDS(?doi, 'PDB')) }