Wikidata:Property proposal/Sequence Ontology ID
Sequence Ontology ID edit
| Data type | External identifier |
|---|---|
| Allowed values | SO:[0-9]+ |
| Example | missense mutation (Q27429979) → SO:0001583 |
| Source | Sequence Ontology |
| Planned use | Upon approval the property will be use immediately in for example items being sourced from the CIViC database |
| Formatter URL | http://www.sequenceontology.org/browser/current_svn/term/$1 |
| Robot and gadget jobs | Bots will populate statements with this property. |
- Motivation
In our efforts on enriching Wikidata with public data on genes, proteins, drugs and diseases, some of the data sources used rely on the sequence ontology (e.g. the CIViC database). Currently we are able to model these entries by using the catalog code/catalog property qualifier pair (e.g. Missense Variant. However the downside of doing so, is that it is not possible to create links to the external source. Having a designated property for Sequence Ontology identifiers, would solve this. A related (declined) property proposal exists. However, although the proposal did got specifically rewritten toward the sequence ontology, the consensus was not reached there. Multiple ontologies exist under the Open Biomedical Ontologies framework. I would like to propose to reconsider a proposal to create a wikidata property, but this primarily focussing on the Sequence Ontology alone. --Andrawaag (talk) 12:13, 16 May 2017 (UTC)
- Discussion
Support This is important for modelling sequence items and is used by most model organism databases (Wormbase, Flybase, MGI, etc) and the EBI Gstupp (talk) 17:04, 16 May 2017 (UTC)
Support Andrew Su (talk) 17:16, 16 May 2017 (UTC)
Support That should be useful for a more solid classification of variants Sebotic (talk) 17:23, 16 May 2017 (UTC)
Support --I9606 (talk) 17:31, 16 May 2017 (UTC)
Support Emitraka (talk) 15:55, 17 May 2017 (UTC)
- @Emitraka, Andrawaag, Andrew Su, Gstupp, I9606:
Done For the next property proposal, please don't remove the subpage information. It's also useful when the TranslateThis template around the description name isn't deleted. ChristianKl (talk) 08:46, 24 May 2017 (UTC)
