Wikidata:WikiProject COVID-19/Data models/Viral genes
This is a template for the Data Model pages on the COVID-19 project.
Natural language description edit
This data model aims to represent viral genes on Wikidata. More specifically, it aims to represent all instance of (P31) (and subclasses) of gene (Q7187) and found in taxon (P703) (and subclasses) of virus (Q808)
EntitySchemas about this model edit
Tools to check the completeness of the items edit
There are tools that can be used to access quality that uses Entity Schemas(http://wikishape.weso.es/) and other data do not (such as ProWD and Integraality )
Properties edit
Defining properties edit
The set of properties that are sufficient and required for an item to be within the scope of this data model.
| Title | ID | Data type | Description | Examples | Inverse |
|---|---|---|---|---|---|
| instance of | P31 | Item | instance of: that class of which this subject is a particular example and member; different from P279 (subclass of); for example: K2 is an instance of mountain; volcano is a subclass of mountain (and an instance of volcanic landform) | surface glycoprotein <instance of> gene | - |
| found in taxon | P703 | Item | natural product: the taxon in which the item can be found Found in "virus", or in subclasses of virus | surface glycoprotein <found in taxon> gene | - |
Basic Properties edit
The set of properties that every item within this scope need to have
| Title | ID | Data type | Description | Examples | Inverse |
|---|---|---|---|---|---|
| encodes | P688 | Item | the product of a gene (protein or RNA) | surface glycoprotein <encodes> spike glycoprotein [SARS-CoV-2] | encoded by |
| Entrez Gene ID | P351 | External identifier | identifier for a gene per the NCBI Entrez database | surface glycoprotein <Entrez Gene ID> 43740568 | - |
| Ensembl gene ID | P594 | External identifier | gene: identifier for a gene as per the Ensembl (European Bioinformatics Institute and the Wellcome Trust Sanger Institute) database | surface glycoprotein <Ensembl gene ID> ? | - |
| NCBI locus tag | P2393 | External identifier | unique gene identifier that can be used for any species of organism | surface glycoprotein <NCBI locus tag> GU280_gp02 | - |
Optional Properties edit
The set of properties that can be used for items within this scope. They might be not always applicable, or just add incremental value, but nevertheless, they are valid.
| Title | ID | Data type | Description | Examples | Inverse |
|---|---|---|---|---|---|
| ortholog | P684 | Item | orthology: orthologous gene in another species (use with 'species' qualifier) | surface glycoprotein <ortholog> ? | - |
Undesired Properties edit
The properties that should not be used with this item. This is not supposed to be exhaustive. The main goal is to capture modeling approaches deemed incorrect by convention.
Additional information edit
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