Wikidata:WikiProject Medicine/Schemas

About

This page collects information about medicine-related Shape Expressions (Q29377880) (ShEx) and their use in EntitySchemas on Wikidata.

List of Shape Expressions

Theoretically useful

• patient
• symptom
• physician
• nurse
• electronic health record
• diagnostic technique
• diagnosis
• medical condition
• disease
• pathogen
• treatment
• pharmaceutical drug
• medical procedure
• hospital
• clinical trial
• patient data
• anatomical entity
• physiological process
• pathological process
• medical specialty
• ethics committee
• epidemic
• health
• public health
• medical journal
• medical society
• more

Available schemas

General

• Wikidata:Database reports/EntitySchema directory and User:HakanIST/EntitySchemaList
  • example: EntitySchema:E369 glacier

Medical schemas

• EntitySchema:E69 disease - basic schema for a human disease according to the disease ontology
• EntitySchema:E72 pharmaceutical drug - basic schema of a pharmaceutical drug
• EntitySchema:E88 health in region - basic scheme for health by region/country items
• EntitySchema:E113 Gene Wiki disease terms - schema for items sourced from the Disease Ontology
• EntitySchema:E137 privacy policy - this item has a privacy policy URL
• EntitySchema:E173 outbreak - Entity schema for outbreak in specific locations
• EntitySchema:E184 pandemic - entity schema of a pandemic
• EntitySchema:E187 hospital - entity schema of hospital
• EntitySchema:E188 2020 coronavirus pandemic local outbreaks - entity schema of 2020 coronavirus pandemic local outbreaks
• EntitySchema:E189 clinical trial - Entity Schema for a clinical trial
• EntitySchema:E195 COVID-19 contact tracing app - Entity schema of COVID-19 contact tracing app
• EntitySchema:E196 covid-19 death - entity schema of a covid-19 related death
• EntitySchema:E210 hospital (Malayalam) - entity schema of hospital (Malayalam)
• EntitySchema:E211 hospital - schema for hospitals
• EntitySchema:E323 Gene Wiki bot for the Disease Ontology - Disease Ontology on Wikidata as monitored and maintained by Gene Wiki bots
• EntitySchema:E344 gene-disease associations - shape patterns on how gene-disease associations are modelled in Wikidata
• EntitySchema:E351 pharmaceutical product - A therapeutical product, usually containing one or more types of compounds as active ingredients
• EntitySchema:E396 ethics committee - schema for an ethics committee, institutional review board or institutional animal care and use committee
• EntitySchema:E397 anatomical structure - schema for an anatomical structure

Common use cases for Shape Expressions

• Standardization
• Quality control
• Subsetting

Issues with Entity Schemas

Issues with existing Entity Schemas

Conceptual issues

Multiple Entity Schemas for the same or closely related concepts

• EntitySchema:E388 taxon2wikipedia variant 7

Dependencies of Entity Schemas

• Dependency trees

Practical issues

Findability

• incomplete SPARQL query

Testing

• Sandboxes

Scalability

• How to use one Shape Expression across a large graph?
• How to use multiple Shape Expressions together?
  • How to standardize the declaration of dependencies?

Issues with missing Entity Schemas

• Any modelling standards to follow?
• What should go into Wikidata or elsewhere?

See also

• Wikidata:WikiProject Schemas
• Wikidata:WikiProject Medicine
• Entity Schema Generator
• Data model for anatomical structures
  • external identifiers commonly occurring on items with Orphanet ID