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LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
mammalian protein found in Rattus norvegicus
LSM4 U6 small nuclear RNA and mRNA degradation associated
U6 snRNA-associated Sm-like protein LSm4
Lsm4
LSM4 homolog, U6 small nuclear RNA associated
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Statements
instance of
protein
1 reference
stated in
UniProt
retrieved
17 November 2021
UniProt protein ID
D4A2C6
part of
LSM domain superfamily
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/D4A2C6
Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/D4A2C6
Sm-like protein Lsm4 family
1 reference
based on heuristic
inferred from protein domain or family
LSM domain, eukaryotic/archaea-type, protein family
1 reference
based on heuristic
inferred from protein domain or family
found in taxon
brown rat
1 reference
stated in
UniProt
retrieved
17 November 2021
UniProt protein ID
D4A2C6
encoded by
Lsm4
1 reference
stated in
UniProt
retrieved
17 November 2021
UniProt protein ID
D4A2C6
molecular function
molecular function
determination method
ND
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Rat genome database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
ND
RNA binding
determination method
IBA
IEA
2 references
retrieved
14 February 2019
stated in
GOA
curator
UniProt
UniProt protein ID
D4A2C6
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
retrieved
14 February 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IBA
U6 snRNA binding
determination method
IBA
1 reference
retrieved
14 February 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IBA
PH domain binding
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
cell component
P-body
determination method
IBA
1 reference
retrieved
14 February 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IBA
nucleus
determination method
IDA
IEA
3 references
retrieved
14 February 2019
stated in
GOA
curator
UniProt
UniProt protein ID
D4A2C6
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
retrieved
14 February 2019
stated in
Dendritic LSm1/CBP80-mRNPs mark the early steps of transport commitment and translational control
GOA
curator
Rat genome database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IDA
spliceosomal complex
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
UniProt
UniProt protein ID
D4A2C6
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
U6 snRNP
determination method
IBA
1 reference
retrieved
14 February 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IBA
cytosol
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
membrane
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
protein-containing complex
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
neuron projection
determination method
IDA
1 reference
retrieved
14 February 2019
stated in
Dendritic LSm1/CBP80-mRNPs mark the early steps of transport commitment and translational control
GOA
curator
Rat genome database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IDA
U4/U6 x U5 tri-snRNP complex
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
U2-type precatalytic spliceosome
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
Lsm2-8 complex
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
biological process
spliceosomal snRNP assembly
determination method
IBA
1 reference
retrieved
14 February 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IBA
mRNA splicing, via spliceosome
determination method
IEA
2 references
retrieved
14 February 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
retrieved
14 February 2019
stated in
GOA
curator
Ensembl genome database project
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
nuclear-transcribed mRNA catabolic process
determination method
IEA
2 references
retrieved
14 February 2019
stated in
GOA
curator
UniProt
UniProt protein ID
D4A2C6
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
retrieved
14 February 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
RNA processing
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
mRNA processing
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
UniProt
UniProt protein ID
D4A2C6
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
biological process
determination method
ND
1 reference
retrieved
14 February 2019
stated in
GOA
curator
Rat genome database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
ND
RNA splicing
determination method
IEA
1 reference
retrieved
14 February 2019
stated in
GOA
curator
UniProt
UniProt protein ID
D4A2C6
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IEA
P-body assembly
determination method
IBA
1 reference
retrieved
14 February 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:D4A2C6
determination method
IBA
has part(s)
LSM domain, eukaryotic/archaea-type
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/D4A2C6
Sm-like protein Lsm4
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/D4A2C6
Identifiers
RefSeq protein ID
NP_001099543
1 reference
stated in
NCBI Gene
retrieved
7 September 2021
Entrez Gene ID
290647
XP_038950245
1 reference
stated in
NCBI Gene
retrieved
7 September 2021
Entrez Gene ID
290647
XP_038950246
1 reference
stated in
NCBI Gene
retrieved
7 September 2021
Entrez Gene ID
290647
UniProt protein ID
D4A2C6
1 reference
stated in
UniProt
retrieved
17 November 2021
UniProt protein ID
D4A2C6
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