User:ProteinBoxBot/2015 Proteins sprint

Overall sumary

In a small sprint we modeled a clinker entry, with the object to import Clinvar as wikidata entries, to facilitate gene-variant-disease disease association.

Participants

• Andra Waagmeester (talk)

Gameplan

1. Inspect the example entry below, to identify data elements to be added by the bot
2. Inspect the different variant types defined by Clinvar and consider its relevance for our property structure
3. List required properties
4. Write/Run Bot

Candidate Properties

• subclass off
• UniProt ID
• biological process
• molecular function
• cell component
• RefSeq Protein ID
• found in taxon
• encoded by
• Ensembl Protein ID
• PDB ID

Background info

Links

• Uniprot SPARQL : [1]
• Proteins in Wikidata;