User:ProteinBoxBot/2015 relations ontology sprint

Closed

This sprint is archived.

Overall summary

Our goal is to make Wikidata the canonical resource for referencing and translating these identifiers. The goal of this sprint is to model gene-disease relations and drugs-disease relations in WIkiData as well to develop the bot to add known relation from authoritative resources.

Participants

• Andrew Su (talk)
• Andra Waagmeester (talk)
• Ben Good (talk)
• Elvira Mitraka (talk)
• Lynn Schriml (talk)
• Sebastian Burgstaller (talk)
• Nuria Queralt Rosinach (talk)

Candidate properties

• significant event
• see also
• has cause
• cause of
• has immediate cause
• immediate cause of
• has contributing factor
• contributing factor of

Misleading candidates

• interaction

Game plan

1. Collaboratively agree on what is in webprotege
2. Get examples for the near future data loads in place
3. Take that structure and the examples and propose it in wikidata
4. Iterate with the wikidata community until a shared vision is in place. Example ontology which can be discussed: Gene Disease Interactions
5. implement it.

Background info

Wikidata discussion links

Help:Modeling causes

Links

• Google doc
• Open Webprotege sandbox for property modeling
• The DisGeNET Association Type Ontology
• DisGeNET associations in Webprotege
• OBO Relations Ontology

Papers

• Relation in biomedical ontologies
• The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
• The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration