Wikidata:WikiProject Medicine/Literature

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This page is a collection of publications that focus on semantic medical data and ontology of medical information. Links to open-access archives are desirable, but no requirement. Conference posters and presentation slides (i.e. not really published material) can ideally be linked to a place where they can be accessed.

2020 edit

Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, Pico AR, Putman T, Riutta A, Queralt-Rosinach N, Schriml LM, Shafee T, Slenter D, Stephan R, Thornton K, Tsueng G, Tu R, Ul-Hasan S, Willighagen E, Wu C, Su AI (March 2020). "Wikidata as a knowledge graph for the life sciences". Elife. 9. doi:10.7554/eLife.52614. PMC 7077981. PMID 32180547.
Southan C (2020). "Opening up connectivity between documents, structures and bioactivity". Beilstein J Org Chem. 16: 596–606. doi:10.3762/bjoc.16.54. PMC 7136548. PMID 32280387.
Seifert H, Weber M, Glöckner FO, Kostadinov I (January 2020). "An open-source GIS-enabled lookup service for Nagoya Protocol party information". Database (Oxford). 2020. doi:10.1093/database/baaa014. PMC 7153957. PMID 32283554.
Yu L, Yu S (July 2020). "Developing an automated mechanism to identify medical articles from wikipedia for knowledge extraction". Int J Med Inform. 141: 104234. doi:10.1016/j.ijmedinf.2020.104234. PMC 7357526. PMID 32693245.
Waagmeester A, Willighagen EL, Su AI, Kutmon M, Labra Gayo JE, Fernández-Álvarez D, Groom Q, Schaap PJ, Verhagen LM, Koehorst JJ (June 2020). "A protocol for adding knowledge to Wikidata, a case report". bioRxiv. doi:10.1101/2020.04.05.026336.
Turki H, Jemielniak D, Hadj Taieb MA, Labra Gayo JE, Ben Aouicha M, Banat M, Shafee T, Prud'Hommeaux E, Lubiana T, Das D, Mietchen D (August 2020). "Using logical constraints to validate information in collaborative knowledge graphs: a study of COVID-19 on Wikidata". Zenodo. doi:10.5281/zenodo.4008358.
Turki H, Hadj Taieb MA, Shafee T, Lubiana T, Jemielniak D, Ben Aouicha M, Labra Gayo JE, Banat M, Das D, Mietchen D (September 2020). "Representing COVID-19 information in collaborative knowledge graphs: a study of Wikidata". Zenodo. doi:10.5281/zenodo.4028482.

2019 edit

Turki H, Shafee T, Hadj Taieb MA, Ben Aouicha M, Vrandečić D, Das D, Hamdi H (November 2019). "Wikidata: A large-scale collaborative ontological medical database". J Biomed Inform. 99: 103292. doi:10.1016/j.jbi.2019.103292. PMID 31557529.
Manske M, Böhme U, Püthe C, Berriman M (2019). "GeneDB and Wikidata". Wellcome Open Res. 4: 114. doi:10.12688/wellcomeopenres.15355.2. PMC 6823904. PMID 31723674.
Mao J, Yao Y, Heinrich S, Hinz T, Weber C, Wermter S, Liu Z, Sun M (2019). "Bootstrapping Knowledge Graphs From Images and Text". Front Neurorobot. 13: 93. doi:10.3389/fnbot.2019.00093. PMC 6861514. PMID 31798437.
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Wu C, Su AI (January 2019). "ChlamBase: a curated model organism database for the Chlamydia research community". Database (Oxford). 2019: baz041. doi:10.1093/database/baz041. PMC 6463448. PMID 30985891.
Mignone A, Grand A, Fiori A, Medico E, Bertotti A (January 2019). "Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research". Database (Oxford). 2019. doi:10.1093/database/baz080. PMC 6615453. PMID 31287543.

2018 edit

Cuzzola J, Bagheri E, Jovanovic J (July 2018). "UMLS to DBPedia link discovery through circular resolution". J Am Med Inform Assoc. 25 (7): 819–826. doi:10.1093/jamia/ocy021. PMID 29648604.

2017 edit

Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM (January 2017). "WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata". Database (Oxford). 2017 (1): bax025. doi:10.1093/database/bax025. PMC 5467579. PMID 28365742.
Lampa S, Willighagen E, Kohonen P, King A, Vrandečić D, Grafström R, Spjuth O (September 2017). "RDFIO: extending Semantic MediaWiki for interoperable biomedical data management". J Biomed Semantics. 8 (1): 35. doi:10.1186/s13326-017-0136-y. PMC 5584330. PMID 28870259.

2016 edit

Putman TE, Burgstaller-Muehlbacher S, Waagmeester A, Wu C, Su AI, Good BM (2016). "Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes". Database (Oxford). 2016: baw028. doi:10.1093/database/baw028. PMC 4822648. PMID 27022157.
Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI (2016). "Wikidata as a semantic framework for the Gene Wiki initiative". Database (Oxford). 2016. doi:10.1093/database/baw015. PMC 4795929. PMID 26989148.

2015 edit

Pfundner A, Schönberg T, Horn J, Boyce RD, Samwald M (May 2015). "Utilizing the Wikidata system to improve the quality of medical content in Wikipedia in diverse languages: a pilot study". J. Med. Internet Res. 17 (5): e110. doi:10.2196/jmir.4163. PMC 4468594. PMID 25944105.
Ayvaz S, Horn J, Hassanzadeh O, Zhu Q, Stan J, Tatonetti NP, Vilar S, Brochhausen M, Samwald M, Rastegar-Mojarad M, Dumontier M, Boyce RD (June 2015). "Toward a complete dataset of drug-drug interaction information from publicly available sources". J Biomed Inform. 55: 206–17. doi:10.1016/j.jbi.2015.04.006. PMC 4464899. PMID 25917055.

2006 edit

Giustini, D. "How Web 2.0 is changing medicine". BMJ. 333 (7582): 1283-1284. PMID 17185707.