(Q21136351)

English

Bare bones pattern formation: a core regulatory network in varying geometries reproduces major features of vertebrate limb development and evolution

scientific article

Bare Bones Pattern Formation: A Core Regulatory Network in Varying Geometries Reproduces Major Features of Vertebrate Limb Development and Evolution

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scholarly article

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Bare bones pattern formation: a core regulatory network in varying geometries reproduces major features of vertebrate limb development and evolution (English)

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author name string

Jianfeng Zhu

1

author given names

Jianfeng

author last names

Zhu

1 reference

PubMed publication ID

17 August 2022

Yong-Tao Zhang

2

author given names

Yong-Tao

author last names

Zhang

1 reference

PubMed publication ID

17 August 2022

Mark S Alber

3

author given names

Mark S

author last names

Alber

1 reference

PubMed publication ID

17 August 2022

Stuart A Newman

4

author given names

Stuart A

author last names

Newman

1 reference

PubMed publication ID

17 August 2022

language of work or name

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publication date

2010

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5

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5

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e10892

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copyright license

Creative Commons Attribution 4.0 International

28 May 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Deep homology and the origins of evolutionary novelty

1 reference

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19 March 2017

Patterns of mesenchymal condensation in a multiscale, discrete stochastic model

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19 March 2017

Tetrapod trackways from the early Middle Devonian period of Poland

1 reference

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19 March 2017

Activator-inhibitor dynamics of vertebrate limb pattern formation

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19 March 2017

Rethinking the proximodistal axis of the vertebrate limb in the molecular era

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

The pectoral fin of Tiktaalik roseae and the origin of the tetrapod limb

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Mixed-mode pattern in Doublefoot mutant mouse limb--Turing reaction-diffusion model on a growing domain during limb development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Notch1 and 2 cooperate in limb ectoderm to receive an early Jagged2 signal regulating interdigital apoptosis

1 reference

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19 March 2017

Multiple joint and skeletal patterning defects caused by single and double mutations in the mouse Gdf6 and Gdf5 genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Ectodermal FGFs induce perinodular inhibition of limb chondrogenesis in vitro and in vivo via FGF receptor 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Functions of FGF signalling from the apical ectodermal ridge in limb development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Smad6 as a transcriptional corepressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

FGF-4 replaces the apical ectodermal ridge and directs outgrowth and patterning of the limb

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Recombinant limbs as a model to study homeobox gene regulation during limb development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Ectodermal-mesodermal interactions in the growth of limb buds in the chick embryo: constancy and temporal limits of the ectodermal induction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Dynamics of Skeletal Pattern Formation in Developing Chick Limb

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Analysis of a new allele of limb deformity (ld) reveals tissue- and age-specific transcriptional effects of the Ld Global Control Region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

19 March 2017

Survival of Hoxa13 homozygous mutants reveals a novel role in digit patterning and appendicular skeletal development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Vertebrate limb bud development: moving towards integrative analysis of organogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Formin1 disruption confers oligodactylism and alters Bmp signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Growth and patterning in the limb: signaling gradients make the decision

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Multiscale models for vertebrate limb development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Models of biological pattern formation: from elementary steps to the organization of embryonic axes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

The role of Hox genes during vertebrate limb development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Morpheus unbound: reimagining the morphogen gradient

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

On multiscale approaches to three-dimensional modelling of morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Hox transcription factors and their elusive mammalian gene targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Mechanisms of pattern formation in development and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Shh and Gli3 are dispensable for limb skeleton formation but regulate digit number and identity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

Analysis of Hox gene expression in the chick limb bud.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

12 September 2017

A mathematical model for outgrowth and spatial patterning of the vertebrate limb bud.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

27 September 2017

A proximo-distal gradient of FGF-like activity in the embryonic chick limb bud.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

27 September 2017

In vitro studies on the morphogenesis and differentiation of the mesoderm subjacent to the apical ectodermal ridge of the embryonic chick limb-bud

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

27 September 2017

Sticky fingers: Hox genes and cell adhesion in vertebrate limb development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

27 September 2017

Role of transforming growth factor-beta in chondrogenic pattern formation in the embryonic limb: stimulation of mesenchymal condensation and fibronectin gene expression by exogenenous TGF-beta and evidence for endogenous TGF-beta-like activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

27 September 2017

Wnt and FGF signals interact to coordinate growth with cell fate specification during limb development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

30 May 2018

Growth based morphogenesis of vertebrate limb bud.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

30 May 2018

A cellular lineage analysis of the chick limb bud.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

30 May 2018

FGF-2 influences cell movements and gene expression during limb development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

30 May 2018

Fibroblast progenitor cells of the embryonic chick limb

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

30 May 2018

The mechanism of precartilage mesenchymal condensation: a major role for interaction of the cell surface with the amino-terminal heparin-binding domain of fibronectin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

30 May 2018

Ectodermal inhibition of cartilage differentiation in micromass culture of chick limb bud mesenchyme in relation to gene expression and cell shape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

30 May 2018

Competent stripes for diverse positions of limbs/fins in gnathostome embryos.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

The chemical basis of morphogenesis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Developmental biology. The Turing model comes of molecular age.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

TGFbeta2 acts as an "activator" molecule in reaction-diffusion model and is involved in cell sorting phenomenon in mouse limb micromass culture.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Activin/TGFbeta and BMP crosstalk determines digit chondrogenesis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

BMPs regulate multiple aspects of growth-plate chondrogenesis through opposing actions on FGF pathways.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Analysis of the molecular cascade responsible for mesodermal limb chondrogenesis: Sox genes and BMP signaling.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Involvement of Notch signaling in initiation of prechondrogenic condensation and nodule formation in limb bud micromass cultures.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

The proximo-distal sequence of origin of the parts of the chick wing and the role of the ectoderm.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Limb chondrogenesis of the seepage salamander, Desmognathus aeneus (amphibia: plethodontidae).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

The morphostatic limit for a model of skeletal pattern formation in the vertebrate limb.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Misexpression of Hoxa-13 induces cartilage homeotic transformation and changes cell adhesiveness in chick limb buds.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

On the evolution and homologies of ichthyopterygian forefins

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Estimating the spatiotemporal pattern of volumetric growth rate from fate maps in chick limb development

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Limb bud and flank mesoderm have distinct "physical phenotypes" that may contribute to limb budding

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Limb development takes a measured step toward systems analysis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Developmental biology. Hox genes in the limb: a play in two acts

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010892

21 January 2018

Extracellular matrix environment influences chondrogenic pattern formation in limb bud micromass culture: experimental verification of theoretical models.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2878345

29 November 2018

BMPs are required at two steps of limb chondrogenesis: formation of prechondrogenic condensations and their differentiation into chondrocytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterisation of hoxa gene expression in the chick limb bud in response to FGF

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamical mechanisms for skeletal pattern formation in the vertebrate limb

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An analysis of the condensation process during chondrogenesis in the embryonic chick hind limb

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A descriptive study of the rate of elongation and differentiation of the skeleton of the developing chick wing

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chick endogenous lectin enhances chondrogenesis of cultured chick limb bud cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

STUDIES ON LIMB MORPHOGENESIS. I. EXPERIMENTS WITH THE POLYDACTYLOUS MUTANT, TALPID

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origination and innovation in the vertebrate limb skeleton: an epigenetic perspective

1 reference

https://pubmed.ncbi.nlm.nih.gov/20531940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0010892

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2010PLoSO...510892Z

0 references

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

0 references

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