(Q21284290)

Dimensions Publication ID

Dimensions

1040413794

https://scigraph.springernature.com/pub.10.1186/1471-2105-5-113

18 August 2022

language of work or name

English

0 references

publication date

19 August 2004

0 references

published in

BMC Bioinformatics

0 references

volume

5

0 references

page(s)

113

0 references

issue

1

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exact match

0 references

cites work

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1 reference

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19 March 2017

1 reference

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19 March 2017

The Protein Data Bank

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SMART: a web-based tool for the study of genetically mobile domains

19 March 2017

1 reference

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A comprehensive comparison of multiple sequence alignment programs

19 March 2017

1 reference

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SMART, a simple modular architecture research tool: identification of signaling domains

19 March 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

1 reference

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

19 March 2017

1 reference

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

19 March 2017

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Touring protein fold space with Dali/FSSP

19 March 2017

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The rapid generation of mutation data matrices from protein sequences

19 March 2017

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Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems

19 March 2017

1 reference

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Recent progress in multiple sequence alignment: a survey

19 March 2017

1 reference

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Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

On the complexity of multiple sequence alignment

19 March 2017

1 reference

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Comprehensive study on iterative algorithms of multiple sequence alignment

19 March 2017

1 reference

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The alignment of sets of sequences and the construction of phyletic trees: an integrated method

19 March 2017

1 reference

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

19 March 2017

1 reference

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Progressive sequence alignment as a prerequisite to correct phylogenetic trees

7 April 2017

1 reference

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Alignment-free sequence comparison-a review

7 April 2017

1 reference

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NCBI Reference Sequence project: update and current status

12 September 2017

1 reference

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BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations

12 September 2017

1 reference

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BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

12 September 2017

1 reference

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SMART: identification and annotation of domains from signalling and extracellular protein sequences

12 September 2017

1 reference

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Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

12 September 2017

1 reference

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Searching databases of conserved sequence regions by aligning protein multiple-alignments

12 September 2017

1 reference

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Optimal alignments in linear space

12 September 2017

1 reference

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Amino acid substitution matrices from an information theoretic perspective

12 September 2017

1 reference

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Local homology recognition and distance measures in linear time using compressed amino acid alphabets

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

A comparison of scoring functions for protein sequence profile alignment.

27 September 2017

1 reference

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Improved sensitivity of profile searches through the use of sequence weights and gap excision.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

COACH: profile-profile alignment of protein families using hidden Markov models.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

Align-m--a new algorithm for multiple alignment of highly divergent sequences.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

RASCAL: rapid scanning and correction of multiple sequence alignments.

29 November 2018

1 reference

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Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

Large-scale comparison of protein sequence alignment algorithms with structure alignments.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

A weighting system and algorithm for aligning many phylogenetically related sequences.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

Volume changes in protein evolution.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517706

Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15318951

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Position-based sequence weights

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15318951

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-5-113

1 reference

43789

DBLP publication ID

journals/bmcbi/Edgar04

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1040413794

0 references

43789

1 reference

1 reference

1 reference