(Q21284322)

Dimensions Publication ID

Dimensions

1024779489

Creative Commons Attribution 2.0 Generic

19 August 2022

language of work or name

English

0 references

publication date

2012

0 references

published in

BMC Bioinformatics

0 references

volume

13

0 references

issue

1

0 references

page(s)

129

0 references

copyright license

start time

13 June 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

Bayes' theorem

1 reference

Europe PubMed Central

18 June 2022

https://europepmc.org/article/PMC/3495709

inferred from PubMed Central ID database lookup

cites work

OMA 2011: orthology inference among 1000 complete genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Sequence context-specific profiles for homology searching

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

MUSCLE: multiple sequence alignment with high accuracy and high throughput

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Evolutionary trees from DNA sequences: A maximum likelihood approach

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

A general method applicable to the search for similarities in the amino acid sequence of two proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Markov models of amino acid substitution to study proteins with intrinsically disordered regions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Exhaustive matching of the entire protein sequence database

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Genome-wide nucleotide-level mammalian ancestor reconstruction

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

An algorithm for progressive multiple alignment of sequences with insertions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Multiple sequence alignment using partial order graphs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

ALF--a simulation framework for genome evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Darwin v. 2.0: an interpreted computer language for the biosciences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Phylogenetic assessment of alignments reveals neglected tree signal in gaps

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Integrated gene and species phylogenies from unaligned whole genome protein sequences.

27 September 2017

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-129

Combining protein evolution and secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-129

An improved algorithm for matching biological sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-129

Empirical and structural models for insertions and deletions in the divergent evolution of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-129

Large-scale comparison of protein sequence alignment algorithms with structure alignments

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495709

Analysis of insertions/deletions in protein structures

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22694311

12 December 2020

inferred from PubMed ID database lookup

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22694311

12 December 2020

inferred from PubMed ID database lookup

Error bounds for convolutional codes and an asymptotically optimum decoding algorithm

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-129

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1186/1471-2105-13-129

0 references

DBLP publication ID

journals/bmcbi/Szalkowski12

1 reference

DBLP Dataset 2021-01-02