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Open source tools for large-scale neuroscience
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scholarly article
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review article
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Europe PubMed Central
title
Open source tools for large-scale neuroscience
(English)
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main subject
open-source software
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author name string
Jeremy Freeman
series ordinal
1
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language of work or name
English
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publication date
June 2015
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published in
Current Opinion in Neurobiology
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volume
32
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page(s)
156-163
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cites work
Automated analysis of cellular signals from large-scale calcium imaging data
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stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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From cosmos to connectomes: the evolution of data-intensive science
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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Spatio-temporal correlations and visual signalling in a complete neuronal population
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Crossref
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https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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Reverse engineering the mouse brain
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reference URL
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7 January 2021
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High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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Whole-brain functional imaging at cellular resolution using light-sheet microscopy
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https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy
1 reference
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reference URL
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7 January 2021
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Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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Light-sheet functional imaging in fictively behaving zebrafish
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Mapping brain activity at scale with cluster computing
1 reference
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reference URL
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Dimensionality reduction for large-scale neural recordings
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reference URL
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Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging
1 reference
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reference URL
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IPython: A System for Interactive Scientific Computing
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Crossref
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Regression-based identification of behavior-encoding neurons during large-scale optical imaging of neural activity at cellular resolution
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Fast nonnegative deconvolution for spike train inference from population calcium imaging
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A Layered Grammar of Graphics
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Wave optics theory and 3-D deconvolution for the light field microscope
1 reference
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reference URL
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Functional clustering drives encoding improvement in a developing brain network during awake visual learning
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Frontoparietal representations of task context support the flexible control of goal-directed cognition
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Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python
1 reference
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https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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Machine learning for neuroimaging with scikit-learn
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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SIMA: Python software for analysis of dynamic fluorescence imaging data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.CONB.2015.04.002
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7 January 2021
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Identifiers
DOI
10.1016/J.CONB.2015.04.002
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1097316
OpenCitations bibliographic resource ID
1097316
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1097316
PubMed publication ID
25982977
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1097316
ResearchGate publication ID
276413936
0 references
Semantic Scholar paper ID
cf59ae3ccc16090672d31b65ec71a893e0fc0a6d
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