(Q24311424)

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A catalytic mechanism that explains a low catalytic activity of serine dehydratase like-1 from human cancer cells: crystal structure and site-directed mutagenesis studies

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A catalytic mechanism that explains a low catalytic activity of serine dehydratase like-1 from human cancer cells: crystal structure and site-directed mutagenesis studies (English)

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crystal structure

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Serine dehydratase

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GOA release 2020-03-11

L-serine catabolic process

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GOA release 2020-03-11

author name string

Taro Yamada

1

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Junichi Komoto

2

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Tatsuo Kasuya

3

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Yoshimi Takata

4

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Hirofumi Ogawa

5

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Hisashi Mori

6

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Fusao Takusagawa

7

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language of work or name

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publication date

May 2008

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Biochimica et Biophysica Acta

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1780

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5

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809-18

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Crystal structure of the pyridoxal-5'-phosphate dependent cystathionine beta-lyase from Escherichia coli at 1.83 A

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of tryptophanase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Three-dimensional structure of O-acetylserine sulfhydrylase from Salmonella typhimurium

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Ligand binding induces a large conformational change in O-acetylserine sulfhydrylase from Salmonella typhimurium

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Identification of an allosteric anion-binding site on O-acetylserine sulfhydrylase: structure of the enzyme with chloride bound

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Product activation of yeast threonine dehydratase by ammonia

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Enzymes of serine metabolism in normal, developing and neoplastic rat tissues

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

The peptide sequences near the bound pyridoxal phosphate are conserved in serine dehydratase from rat liver, and threonine dehydratases from yeast and Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Enzymatic and biochemical properties of a novel human serine dehydratase isoform

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Some biochemical and histochemical properties of human liver serine dehydratase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Three-dimensional structure of a new enzyme, O-phosphoserine sulfhydrylase, involved in l-cysteine biosynthesis by a hyperthermophilic archaeon, Aeropyrum pernix K1, at 2.0A resolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Two structures of alliinase from Alliium sativum L.: apo form and ternary complex with aminoacrylate reaction intermediate covalently bound to the PLP cofactor

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

On the role of alphaThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of IscS, a cysteine desulfurase from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Evidence for a dimeric structure of rat liver serine dehydratase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Localization and hormonal control of serine dehydratase during metabolic acidosis differ markedly from those of phosphoenolpyruvate carboxykinase in rat kidney.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

An expanded two-state model accounts for homotropic cooperativity in biosynthetic threonine deaminase from Escherichia coli.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Human cystathionine beta-synthase is a heme sensor protein. Evidence that the redox sensor is heme and not the vicinal cysteines in the CXXC motif seen in the crystal structure of the truncated enzyme

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal Structure of Serine Dehydratase from Rat Liver,

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Kinetic and structural characterization of Slr0077/SufS, the essential cysteine desulfurase from Synechocystis sp. PCC 6803.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Conformational Changes in the tryptophan synthase from a hyperthermophile upon alpha2beta2 complex formation: crystal structure of the complex

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure of the O-acetylserine sulfhydrylase isoenzyme CysM from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structures of apo- and holo-tyrosine phenol-lyase reveal a catalytically critical closed conformation and suggest a mechanism for activation by K+ ions

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure, mechanism, and conformational dynamics of O-acetylserine sulfhydrylase from Salmonella typhimurium: comparison of A and B isozymes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Synthesis and characterization of allosteric probes of substrate channeling in the tryptophan synthase bienzyme complex

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

BetaQ114N and betaT110V mutations reveal a critically important role of the substrate alpha-carboxylate site in the reaction specificity of tryptophan synthase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Exchange of K+ or Cs+ for Na+ induces local and long-range changes in the three-dimensional structure of the tryptophan synthase alpha2beta2 complex

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

The crystal structure of Citrobacter freundii tyrosine phenol-lyase complexed with 3-(4'-hydroxyphenyl)propionic acid, together with site-directed mutagenesis and kinetic analysis, demonstrates that arginine 381 is required for substrate specificity

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Slow-binding inhibition of Escherichia coli cystathionine beta-lyase by L-aminoethoxyvinylglycine: a kinetic and X-ray study

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Loop closure and intersubunit communication in tryptophan synthase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystallographic studies of phosphonate-based alpha-reaction transition-state analogues complexed to tryptophan synthase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of wild-type tryptophan synthase complexed with the natural substrate indole-3-glycerol phosphate

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Inhibitors of bacterial cystathionine beta-lyase: leads for new antimicrobial agents and probes of enzyme structure and function

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

15N nuclear magnetic resonance studies of acid-base properties of pyridoxal-5'-phosphate aldimines in aqueous solution.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Covalent structure of biodegradative threonine dehydratase of Escherichia coli: homology with other dehydratases

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Isolation and nucleotide sequence of the cDNA for rat liver serine dehydratase mRNA and structures of the 5' and 3' flanking regions of the serine dehydratase gene

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Biosynthetic threonine deaminase gene of tomato: isolation, structure, and upregulation in floral organs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of the cystine C-S lyase from Synechocystis: stabilization of cysteine persulfide for FeS cluster biosynthesis

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

The low barrier hydrogen bond in enzymatic catalysis.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural basis for the impaired channeling and allosteric inter-subunit communication in the beta A169L/beta C170W mutant of tryptophan synthase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of the beta Ser178--> Pro mutant of tryptophan synthase. A "knock-out" allosteric enzyme

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structures of a new class of allosteric effectors complexed to tryptophan synthase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

The active principle of garlic at atomic resolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Snapshots of the cystine lyase C-DES during catalysis. Studies in solution and in the crystalline state

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Molecular basis of cysteine biosynthesis in plants: structural and functional analysis of O-acetylserine sulfhydrylase from Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural insights into catalysis and inhibition of O-acetylserine sulfhydrylase from Mycobacterium tuberculosis. Crystal structures of the enzyme alpha-aminoacrylate intermediate and an enzyme-inhibitor complex

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of cystalysin from Treponema denticola: a pyridoxal 5'-phosphate-dependent protein acting as a haemolytic enzyme

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

X-ray structure of MalY from Escherichia coli: a pyridoxal 5′-phosphate-dependent enzyme acting as a modulator in mal gene expression

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure of human cystathionine beta-synthase: a unique pyridoxal 5'-phosphate-dependent heme protein

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Three-dimensional structure of 4-amino-4-deoxychorismate lyase from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Studies on Substrate Induction of Serine Dehydratase of Rat Liver

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

SARFing the PDB.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

The three-dimensional structure of cystathionine beta-lyase from Arabidopsis and its substrate specificity

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural Basis for Interaction of O-Acetylserine Sulfhydrylase and Serine Acetyltransferase in the Arabidopsis Cysteine Synthase Complex

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure of Escherichia coli tryptophanase.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of the pyridoxal-5'-phosphate-dependent serine dehydratase from human liver

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Evolutionary relationships among pyridoxal-5'-phosphate-dependent enzymes. Regio-specific alpha, beta and gamma families

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

The crystal structure of the tryptophan synthase beta subunit from the hyperthermophile Pyrococcus furiosus. Investigation of stabilization factors

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

High resolution structure and catalysis of O-acetylserine sulfhydrylase isozyme B from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

The Sequence of the Human Genome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

A low-barrier hydrogen bond in the catalytic triad of serine proteases

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

"Strong" hydrogen bonds in chemistry and biology

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

Mice have a transcribed L-threonine aldolase/GLY1 gene, but the human GLY1 gene is a non-processed pseudogene

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGEN.2008.01.020

7 January 2021

based on heuristic

inferred from DOI database lookup

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10.1016/J.BBAGEN.2008.01.020

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