(Q24318506)

methylated histone binding

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author name string

Woo Yong Lee

1

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Daeyoup Lee

2

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Won-Il Chung

3

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Chang Seob Kwon

The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide

4

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language of work or name

English

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publication date

May 2009

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published in

The Plant Journal

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volume

58

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issue

3

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page(s)

511-24

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cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Alfin1 transcription factor overexpression enhances plant root growth under normal and saline conditions and improves salt tolerance in alfalfa

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The Arabidopsis PHD-finger protein SHL is required for proper development and fertility.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

It takes a PHD to read the histone code

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Chromatin modifications and their function

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

High-resolution profiling of histone methylations in the human genome

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The PHD finger, a nuclear protein-interaction domain

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

After a decade of study-ING, a PHD for a versatile family of proteins

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Grow-ING, Age-ING and Die-ING: ING proteins link cancer, senescence and apoptosis

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The PHD finger of the chromatin-associated protein ING2 functions as a nuclear phosphoinositide receptor

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

No evidence for PHD fingers as ubiquitin ligases

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The PHD finger: implications for chromatin-mediated transcriptional regulation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Alfin1, a novel zinc-finger protein in alfalfa roots that binds to promoter elements in the salt-inducible MsPRP2 gene

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Crystal structure of the nucleosome core particle at 2.8 Å resolution

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Suppression of the novel growth inhibitor p33ING1 promotes neoplastic transformation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

HAT3.1, a novel Arabidopsis homeodomain protein containing a conserved cysteine-rich region

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Developmental and auxin‐induced expression of the Arabidopsis prha homeobox gene

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The Arabidopsis MALE STERILITY1 (MS1) gene is a transcriptional regulator of male gametogenesis, with homology to the PHD-finger family of transcription factors.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Polycomblike PHD fingers mediate conserved interaction with enhancer of zeste protein

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Pygopus residues required for its binding to Legless are critical for transcription and development

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The polybasic region that follows the plant homeodomain zinc finger 1 of Pf1 is necessary and sufficient for specific phosphoinositide binding

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Molecular Basis of Histone H3K4me3 Recognition by ING4

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

NucPred--predicting nuclear localization of proteins

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Phylogenetic analysis of the ING family of PHD finger proteins

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The genes encoding Arabidopsis ORC subunits are E2F targets and the two ORC1 genes are differently expressed in proliferating and endoreplicating cells

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

cDNA encoding putative zinc finger motifs from salt-tolerant alfalfa (Medicago sativa L.) cells

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Transgenic overexpression of the transcription factor alfin1 enhances expression of the endogenous MsPRP2 gene in alfalfa and improves salinity tolerance of the plants

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The Arabidopsis MALE MEIOCYTE DEATH1 gene encodes a PHD-finger protein that is required for male meiosis

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

In vitro specificities of Arabidopsis co-activator histone acetyltransferases: implications for histone hyperacetylation in gene activation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Cellular differentiation regulated by gibberellin in the Arabidopsis thaliana pickle mutant

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

ICBP90, a novel methyl K9 H3 binding protein linking protein ubiquitination with heterochromatin formation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Three yeast proteins related to the human candidate tumor suppressor p33(ING1) are associated with histone acetyltransferase activities.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

TheDUETgene is necessary for chromosome organization and progression during male meiosis inArabidopsisand encodes a PHD finger protein

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

The Arabidopsis OBERON1 and OBERON2 genes encode plant homeodomain finger proteins and are required for apical meristem maintenance.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2009.03795.X

7 January 2021

10.1111/J.1365-313X.2009.03795.X

Identifiers

DOI

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

19154204

1 reference

Consolidated OpenCitations Corpus – April 2017