(Q24531644)

4 July 2017

title

Computational prediction of native protein ligand-binding and enzyme active site sequences (English)

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4 July 2017

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computational biology

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Raj Chakrabarti

1

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4 July 2017

Alexander M Klibanov

series ordinal

2

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4 July 2017

Richard A Friesner

series ordinal

3

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4 July 2017

language of work or name

English

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publication date

5 July 2005

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Proceedings of the National Academy of Sciences of the United States of America

4 July 2017

published in

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4 July 2017

volume

102

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4 July 2017

issue

29

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4 July 2017

page(s)

10153-10158

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Native protein sequences are close to optimal for their structures

4 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Repacking the Core of T4 lysozyme by automated design

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Structures of two kinetic intermediates reveal species specificity of penicillin-binding proteins

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Sugar and signal-transducer binding sites of the Escherichia coli galactose chemoreceptor protein

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Structural origins of high-affinity biotin binding to streptavidin

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

A hierarchical approach to all-atom protein loop prediction

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

The dead-end elimination theorem and its use in protein side-chain positioning

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Crystal structures of beta-galactosidase from Penicillium sp. and its complex with galactose.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Computational design of receptor and sensor proteins with novel functions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Folding free energy function selects native-like protein sequences in the core but not on the surface

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Protein topology and stability define the space of allowed sequences.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Extending the accuracy limits of prediction for side-chain conformations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Energy functions for protein design

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Asn177 in Escherichia coli thymidylate synthase is a major determinant of pyrimidine specificity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Prediction of amino acid sequence from structure

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

Computer search algorithms in protein modification and design.

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0504023102

The SGB/NP hydration free energy model based on the surface generalized born solvent reaction field and novel nonpolar hydration free energy estimators.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177389

29 November 2018

Identifiers

DOI

10.1073/PNAS.0504023102

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4 July 2017

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