(Q24545834)

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Estimating the "effective number of codons": the Wright way of determining codon homozygosity leads to superior estimates

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Estimating the "effective number of codons": the Wright way of determining codon homozygosity leads to superior estimates (English)

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Anders Fuglsang

1

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language of work or name

English

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publication date

February 2006

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published in

Genetics

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volume

172

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issue

2

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page(s)

1301-7

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cites work

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

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PubMed Central

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24 March 2017

The 'effective number of codons' used in a gene

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PubMed Central

reference URL

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retrieved

24 March 2017

Codon usage and tRNA content in unicellular and multicellular organisms

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PubMed Central

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retrieved

7 April 2017

Towards a resolution on the inherent methodological weakness of the "effective number of codons used by a gene".

1 reference

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PubMed Central

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retrieved

27 September 2017

Correlation of codon bias measures with mRNA levels: analysis of transcriptome data from Escherichia coli

1 reference

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PubMed Central

reference URL

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retrieved

27 September 2017

On the methodological weakness of 'the effective number of codons': a reply to Marashi and Najafabadi

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1456227

retrieved

27 September 2017

How reliable re-adjustment is: correspondence regarding A. Fuglsang, "The 'effective number of codons' revisited".

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PubMed Central

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retrieved

27 September 2017

The 'effective number of codons' revisited

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1456227

retrieved

27 September 2017

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

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PubMed Central

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27 September 2017

Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

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PubMed Central

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27 September 2017

Codon usage in bacteria: correlation with gene expressivity

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27 September 2017

An evaluation of measures of synonymous codon usage bias.

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30 May 2018

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

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reference URL

https://pubmed.ncbi.nlm.nih.gov/16299393

retrieved

12 December 2020

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Identifiers

DOI

10.1534/GENETICS.105.049643

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PMC publication ID

1456227

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PubMed publication ID

16299393

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ResearchGate publication ID

7470012

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(Q24545834)

Estimating the "effective number of codons": the Wright way of determining codon homozygosity leads to superior estimates

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